Fomitiporia mediterranea: FOMMEDRAFT_152913
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Entry
FOMMEDRAFT_152913 CDS
T03132
Name
(RefSeq) DNA glycosylase
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FOMMEDRAFT_152913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_152913
Enzymes [BR:
fme01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
FOMMEDRAFT_152913
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FOMMEDRAFT_152913
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
18674096
NCBI-ProteinID:
XP_007263732
JGI:
Fomme1_152913
LinkDB
All DBs
Position
Unknown
AA seq
342 aa
AA seq
DB search
MIEDEELDEARENESKSKLRLSLEKFTFRSPQPSPKPSRRSERGMALEEPVRVISRLPSP
VKKRQLTTALNDSPTKAKKQRGYAGPEKYAHLDHLTDCLGDYLDVLFCGINPGVRSATEG
HHFAHPGNRFYKMLHGSGFTDRLVPPAEDHTLPALYNIGIINLVDRPSSCEDELSSKEMV
EGVPSLLRKVVKYKPRFICFIGKGMSERVERGFKLAIARNRSSSQYFDTSQEPARTTTPS
RKRHKGASLARHTDNSDSADSGIGLRPFKITHADNTGPVKETLFFCSHSSSGLATSMNLQ
EKTDVLKQLREFVAKHKVGTLDTSTFEEVPVEFDTVQTAQVT
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagatgaagagttagatgaagcccgtgaaaacgaatcaaaatcaaagctcaga
ctatccctggagaagttcactttccgttctcctcagccgtcacccaaaccatcaaggcgc
agcgaacgaggtatggctttggaagagccagtgcgagttatatccagactgcctagcccg
gtaaagaagaggcaactcaccacggcattaaatgactctcctacgaaggcgaaaaagcag
cgaggctatgctggtccagagaaatatgcgcatctggatcacctcacagactgccttgga
gattacctagacgtgctattctgcgggataaaccctggagtgcgttctgcaacagaggga
catcatttcgctcatcccggaaatagattctataaaatgctccatggatcaggctttaca
gatcgtctcgtccctccagcggaagaccatactttgcctgctttgtataacattggaata
attaatttagtcgatcgtccttcaagttgcgaggacgagttgtcatccaaggaaatggta
gaaggcgtaccgtccctgctccggaaagttgtaaaatataaacctcgattcatatgtttc
atcggaaaaggcatgtctgaaagggttgagagaggttttaagcttgcgatcgcaagaaac
agaagttcgagccagtattttgatacttcgcaagaacccgcgagaacgacaacgccttca
agaaaacgacataaaggagcaagcttagcaaggcacacagataattcggattctgcagat
agtgggattggtcttaggccattcaagattacccacgcagataacactggacccgtgaag
gagaccttattcttctgctcgcatagttcttcaggacttgcgacgagcatgaacttgcag
gaaaagactgatgttctcaaacaactccgtgaattcgtcgccaagcataaagtaggaaca
ctcgatacgtcgacattcgaagaagttcctgttgaattcgatactgtgcaaactgcacag
gtcacttga
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integrated database retrieval system
