Fomitiporia mediterranea: FOMMEDRAFT_169136
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Entry
FOMMEDRAFT_169136 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_169136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_169136
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
FOMMEDRAFT_169136
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_25
RsgA_GTPase
Dynamin_N
AAA_23
AAA_15
AAA_28
AAA
AAA_22
MMR_HSR1
PduV-EutP
MeaB
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
18676944
NCBI-ProteinID:
XP_007268187
JGI:
Fomme1_169136
LinkDB
All DBs
Position
Unknown
AA seq
311 aa
AA seq
DB search
MSSDINNNNTADPDTGPAIYVENLTFTHSPGAEPALSNLNLSLPRGSRTLLIGANGAGKS
TLLQLLAGKRLLPKSSIVRVLGADVFTRTSARITFLGTEWASNPVVRGDIAVSHFLDSVG
GYRHAERRDRLLDLLDVDLDWHMHMISDGERRRVQLVMGLMAPWDVLLLDEVTVDLDVLV
RDELLTFLKKESESRGATILYATHIFDGLNAFPTSIIHMRLGEIVGEPLPWPSPSRLIEL
VALPTTIDSEFTRSGSTLHMTALQWLKGDREHRRELERNGRKMRGARRAVNGSDSVPTDS
ETFFRKYDYNN
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgacattaataacaataacacagccgaccccgacactgggcctgcaatctac
gtcgagaatctcactttcacgcactcgcctggtgcagaacccgctctttcaaacctcaac
ctctctctgccacgcggttcacgcacgctcctcatcggtgcgaacggtgcaggcaagtca
acgctcctccaactcctcgcaggtaaacgcctcctacccaaatcaagcatcgtacgcgta
ctcggcgcagacgtctttacgcgtacatcagcgcgaatcacgttcctcggcaccgaatgg
gcctcgaaccccgtcgtacgcggtgatattgctgtgtcgcatttcctcgatagcgttggt
ggttatcggcacgctgaacgtagagatcgactgcttgatttattggatgtggatttggat
tggcatatgcatatgatatcggatggtgaacgacggagagtgcagcttgttatgggtctt
atggctccttgggacgtcttgttactggatgaagtcactgttgatttggacgtacttgta
cgtgatgagctccttacgttccttaagaaagagagcgagtcgcgcggagcaactatcctc
tatgcaacgcatattttcgacggactcaacgccttccccacaagcatcatacacatgcgt
ctcggcgagatagtcggcgaacctctaccctggccttcaccatctcgtcttatcgagctc
gtagcactacctaccaccatcgatagcgaattcactcgttcaggctcaacactccacatg
actgccctccaatggctcaaaggagaccgtgaacatagacgagaactcgagcgaaatggt
cgcaagatgcgtggagcgagacgcgcggtgaatggttctgactctgtccccacagattcc
gaaacgtttttccgaaagtacgactataataactag
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