Fomitiporia mediterranea: FOMMEDRAFT_72072
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Entry
FOMMEDRAFT_72072 CDS
T03132
Name
(RefSeq) DNA ligase/mRNA capping enzyme
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FOMMEDRAFT_72072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_72072
Enzymes [BR:
fme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FOMMEDRAFT_72072
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
FOMMEDRAFT_72072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
18679548
NCBI-ProteinID:
XP_007262484
JGI:
Fomme1_72072
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
FRRWVQELRKRFPRPPPDTTKMIFLMLFPEEDVRRKYGMQEVMLARVLDGVLSVNGSLKR
WASSCDTCTSSLGEEVCRVMSCSATEDDGNYNTVTIQEVNSMLDELAAKSRFSACELRDP
AAKSDRSRQTILQSVFRKLRPFEAAVLTQIILKDLRPVIYPVKSTSSTAEALLEFNSKAV
HVLTMHETMRVWDPSRLLLRCYKVQATIEDSVRLFESGDLEMVGPRIGVPVQIPKCVKGQ
GCKHALAQFKTPESVWAETKYDGERMQIHIAVDKTGGTEITIFSKSKRDSTLDRIATHWH
DLFLILIIREALGLRHSNLDEIVERAAPQKRRSVNVSSVILEAEMVAFDDKYAEFWRIRE
LVESTAVGARRKTGQVESRFSDSSDDACRHLALVFFDILYLNGRSLLSESYYSRRATLES
VIRPIPKYAFLAHRTEIPLSGPQLCGQGLETLERIFSECIANYEEGLVLKASHATYNDYG
CPWVKLKKDYIPGYGDAVDLVLVGASWEKERGRTLRVPPSTFTTFYVAVLRDSNQNGRPP
HLEVLFMVSYGLDRRQLEQLNFLISSMSPLNYTEEQRWSELPFSFSLAKGLAKPKVILTS
PLLVELFGAGFTKSCEGNSYELRFPRISKVYRAKDRNWQEGMVNDPLYLCCLTCKQV
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
ttcagaagatgggtacaagagctacgaaagcggttcccccgccctccacctgatacgact
aagatgatttttttgatgttatttccggaggaggatgtgaggaggaagtatgggatgcag
gaggttatgttggcgagggtgcttgatggtgttttgagcgttaatggaagcttgaaacgt
tgggcgtcttcttgtgatacttgtacgtcttctcttggggaagaggtttgcagggttatg
tcgtgttctgctaccgaagacgatggtaattataacactgtcactattcaagaggtgaac
tcaatgctagacgagttggcagcaaagtcaagattctctgcgtgcgaacttcgagatccg
gctgccaaatccgatcgttctcgccagacaatcctgcaaagcgtatttcgcaagctacga
ccatttgaagctgccgtcctgacccagataatcctcaaagatctcagacctgtgatttat
cccgttaagagtacatcttctactgctgaggcgcttttggagttcaattcgaaggcagta
cacgtgttaacgatgcatgagactatgcgtgtttgggatccttcgaggttgctgttacga
tgttacaaggtacaggcgacgattgaggattcggttcggttgtttgagagtggggatttg
gagatggttgggcctaggattggtgtgccagttcagattcctaaatgcgtcaaaggtcag
ggttgcaagcatgctctagcccagtttaagacaccggagtcagtctgggcagagacgaaa
tatgatggcgaaagaatgcaaattcatatcgcagtagataagacggggggcaccgaaatc
accattttcagcaagagtaaacgggattcgacgttggatcgtattgcgacacactggcat
gacctttttctcattttgattattagagaagccctgggtttgcggcattcaaatctggat
gagattgttgaacgagctgcgccacagaagcggcgttcagtgaatgtttcgtcagtgatc
cttgaagctgagatggtagcgtttgatgataaatacgcagagttctggagaatcagggaa
cttgtggagtcaacggctgtaggagctcgaaggaagacgggtcaagtcgagtcaaggttt
agtgactcttccgacgacgcatgcagacacctcgcccttgtattctttgatattttgtat
ctcaatggtcgttcgctgctctcggaatcttattactctcgtagagcaacacttgaatca
gtcattagacccataccgaagtatgcttttcttgcgcatcggactgagatccccctatct
ggtccgcagctatgcggccaaggtttggaaacgttggaacgtattttctccgagtgcata
gcaaactacgaagagggcctcgttctgaaggcgtcacacgcaacgtataatgactatgga
tgcccatgggtcaaactgaagaaagactatattcctggttatggagatgcggtagacctt
gtcctcgttggggcttcttgggagaaggaaagaggaaggacactgcgagtgccaccttcg
acatttacgacgttctatgtcgcagtgcttcgcgactctaatcagaatggccgccctccg
caccttgaggtcctcttcatggtttcgtacggccttgatcgcaggcagctcgagcagttg
aattttctgattagttctatgagtccattgaattatacggaagagcagcggtggagcgaa
ctgcctttcagttttagcctggcgaaaggtcttgcaaagcccaaggtcatcctgacaagt
cctctgctcgtcgagttgtttggagctgggtttaccaagtcttgtgaaggcaattcttat
gaattgcgattcccccggataagcaaagtctacagagctaaagaccggaactggcaagaa
ggtatggttaacgatccattgtatttatgttgtcttacatgcaaacaggtctga
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integrated database retrieval system
