Francisella marina: F0R74_05540
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Entry
F0R74_05540 CDS
T06206
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fmi
Francisella marina
Pathway
fmi03030
DNA replication
fmi03410
Base excision repair
fmi03420
Nucleotide excision repair
fmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F0R74_05540 (ligA)
03410 Base excision repair
F0R74_05540 (ligA)
03420 Nucleotide excision repair
F0R74_05540 (ligA)
03430 Mismatch repair
F0R74_05540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fmi03032
]
F0R74_05540 (ligA)
03400 DNA repair and recombination proteins [BR:
fmi03400
]
F0R74_05540 (ligA)
Enzymes [BR:
fmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F0R74_05540 (ligA)
DNA replication proteins [BR:
fmi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F0R74_05540 (ligA)
DNA repair and recombination proteins [BR:
fmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F0R74_05540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F0R74_05540 (ligA)
MMR (mismatch excision repair)
DNA ligase
F0R74_05540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F0R74_05540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
RNA_ligase
HHH
Rnk_N
Motif
Other DBs
NCBI-ProteinID:
QEO57342
LinkDB
All DBs
Position
complement(1132050..1134086)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISIDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDL
VDDNPELKPSNSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKSVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRRPDAQMVEMPTNCPV
CDSAIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGTKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGSLDSFREAKFEQLIEINDIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTK
AQQLGVEVILEEGLAGLI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatctctatagactataaaactttaactaaagcacaattaaaa
tcatatattgatgatcttgcagagtatctaggcgaacaaagctatttgtatcatactata
gataagccagttattactgactcagactacgataagttattccgattattacaagattta
gttgatgataatccggagcttaagccatcaaactcagtattagatcgcgttggaggtgat
gttttagcaggatttgagactatcaagcataagaagaaaatgacatctctggcaaatgtt
tttagtctagaggagttgcgtgatttttatgacaaaatagagtatgacattgagcttgaa
tgtgaacctaaaatggatggcttggctattagtatcttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtatccgaaaatgtcaaaacc
atccgtaatgtcccacttaaactaaatacttcaaatcctccagaggaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctcttaatgagtatatgcaaacacat
gagaataaaacttttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagagaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacttattacaaagctttggc
tttactatcagtgataatatgtttttggcaaaaaacttctcagaagttgaagtgtatcac
cataagatgagtcatcagcgtgcagatttagcttatgatattgatggtttagtttttaag
gttaataatattaaattacaagatactatcggctacactgctagaggacctaagtgggct
atagcatataagtttccagctgaagaggtagagtcagaagttctaaatgtagaattccaa
gttggtagaacaggagcaattaccccagttgcaagacttaagtcagttgcagttggtggt
gtaatagtttcaaatgcaactttgcataatatcaatgaaattaaacgcaaagatatccga
gtcggtgatagagtcatcgtacgtagagctggggatgtaattccagaagtggtcaaaagc
ttaccacaatatcgtaggcctgatgcacagatggttgagatgccaacaaattgtccagtt
tgtgattcagcaattgagaatatcaacgatcaggctatatatcgttgtacaggagggtgg
cattgtcaggctcaaactactgagcgcttgaagcactttgtctctcgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcagatttgatcaagtac
ccagcggatatttataagctcaattttgagcaattgacaggcttagaaagaatgggtact
aaatcatcgcaaaatgttttagattctatcacaaaaagtaaagagccaagtttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtatcatcagaagctttagccaat
cattttggtagtttagatagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattctggcaagattccctaaatata
caaattgttgatgaattactaggcaattctattaacatccaaaatccagaaaaaattgag
caagcacataatgagagttttacaaataaaacaattgtgattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaacggatatggttatttgtggtgataatgctggaagtaagcttaccaaa
gcacaacaattaggtgttgaagttattttagaagaagggttagcaggtttaatatag
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