Fidelibacter multiformis: FMIA91_16350
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Entry
FMIA91_16350 CDS
T10786
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fml Fidelibacter multiformis
Pathway
fml03030
DNA replication
fml03410
Base excision repair
fml03420
Nucleotide excision repair
fml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FMIA91_16350 (ligA)
03410 Base excision repair
FMIA91_16350 (ligA)
03420 Nucleotide excision repair
FMIA91_16350 (ligA)
03430 Mismatch repair
FMIA91_16350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fml03032
]
FMIA91_16350 (ligA)
03400 DNA repair and recombination proteins [BR:
fml03400
]
FMIA91_16350 (ligA)
Enzymes [BR:
fml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FMIA91_16350 (ligA)
DNA replication proteins [BR:
fml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FMIA91_16350 (ligA)
DNA repair and recombination proteins [BR:
fml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FMIA91_16350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FMIA91_16350 (ligA)
MMR (mismatch excision repair)
DNA ligase
FMIA91_16350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FMIA91_16350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RUBY_RBDX
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BFN37756
LinkDB
All DBs
Position
complement(1977810..1979810)
Genome browser
AA seq
666 aa
AA seq
DB search
MKDVKKRVEELTRELNEHNYRYYVLDDPLVSDAEFDRLFRELVELEEKYPQYRLPDSPTQ
RVGAEPLEAFGTLVHRTPMLSLENAMNEGEIREFIRRVRKELGENHNLTWVGEPKLDGLG
VELIYEKGVFTAGATRGDGYRGENITQNLKTIRQIPLKLRGDDIPDIVEVRGEVMISHEN
FETLNREREKAGESLFANPRNAAAGSLRQLDSSVTARRPLEIFIYSPGEINGMTFETHWE
FLGQLKKWGFRVNPYAKRLIEDEEVIQYFRKMEKDRDSLAYDIDGVVIKVNEIAYQQALG
MRTRTPRWAIAGKFKARQETTRIVDIEASVGRTGVITPVAILEPVQIGGVTVSRATLHNQ
DEIDRKDIRIGDTVVVERAGDVIPKVIKVIPEKRPEDTKPYHLPETCPVCGSETSRLEDN
VAIRCTNISCPAQLKASIAHFVSRKGMDIEGLGEKIVDQLIQEGLVKSPADLYRLKEADL
CDLDRFGEKSAANLIEAVEHSRSRPLQALIYALGIPNTGEYLSRILAETFGSVDALMDAS
REDLDNIEGIGPVVAEGITIYFENEQNRKLIRDLQNAGINPTVEKDTKEPRIFSGKTFVF
TGSLEKFTRDEAKEMVRVRGGSATGSVSRKTDYVVAGPGAGSKLDKAKSLGIKILSEDEF
LKMVGE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatgttaagaaacgggtggaagaactgacccgggaactcaatgaacacaattac
cgctattatgttctggatgatccacttgtgtcggatgcagaatttgaccgtttattcagg
gaactggtggaactggaagagaagtatccccaataccgccttcctgattcacccacacaa
agggtgggagcagagcctctggaagcctttgggacccttgtacaccgcacgcccatgctg
agcctggaaaatgctatgaacgaaggagaaatccgggaatttatccgccgggtgcggaaa
gaattgggagagaatcataaccttacctgggttggggaacccaaactggacggcctgggt
gtggaattgatttatgaaaagggtgtttttacagccggagccacccggggggatggttac
cggggggaaaatatcacccaaaatctgaagaccatccgccagattcctttgaaactcagg
ggggatgatattccggacattgtggaagtccggggcgaggtgatgatatcccatgaaaac
tttgaaacattgaaccgtgaacgggaaaaggccggagaaagcctttttgccaatccccgg
aatgccgcggcaggttctctcagacagcttgattcgtccgtgacggccaggcgtcccctg
gaaatttttatctactcaccgggtgagatcaacggaatgacctttgaaacgcactgggaa
tttttgggacagttgaaaaaatggggattccgggtcaatccgtacgcaaaacgtcttata
gaagatgaagaggtgatccaatattttcggaagatggaaaaggatcgtgactccctcgcc
tatgatattgacggggtagtgataaaagtgaatgaaatcgcttatcagcaggctttgggg
atgcggacccgcacaccccggtgggcgattgccggaaaattcaaagcccggcaggagaca
acgcgcattgtggatattgaagccagtgtcggccggaccggggtgattacaccggtagcc
attttggaaccggttcaaatcggcggagtcacggtgagccgtgccaccctccataatcag
gatgaaattgaccgaaaagatatccggattggagacacagtggttgtggaacgggccggg
gatgtgattcccaaagttatcaaagtcattcccgaaaaacggccggaagacaccaaacca
taccatcttcctgaaacctgtcccgtctgcggcagtgaaacctcacggctggaggataat
gtagccatccgttgtaccaatatttcctgtccggcccagctcaaagccagcattgcccat
tttgtttcccggaaaggcatggatattgaggggttgggagagaaaattgtggatcaactg
atacaggaaggtctggtgaaatcaccggcggatctttaccggttaaaagaagcagatctc
tgtgatctggaccgttttggtgaaaaatcggcggcgaacctgatcgaggctgtagagcat
tccagatcccggcctcttcaggctctgatttatgccctggggattccgaatacgggggaa
tatctcagccgtattctggctgaaacctttgggtctgtggatgccctcatggatgcatca
cgggaggatctggacaacattgaaggcatcggtcctgtcgtagcggaagggattaccatt
tattttgaaaatgaacaaaaccggaagctcatccgggatttacagaatgcaggcatcaat
cccaccgtggaaaaagacacgaaagaaccccggatattttcaggaaagacatttgtcttt
accggttcattggaaaaattcacacgggacgaagcaaaagagatggtccgcgtgagaggc
ggctcggcaacaggcagtgtcagccgtaaaaccgattatgtagttgccggtcccggcgcc
ggttcaaagctggacaaggccaaatccctgggaattaaaattctcagtgaagatgaattt
ttgaagatggtgggggagtga
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