Fusobacterium mortiferum: C4N19_06335
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Entry
C4N19_06335 CDS
T05444
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fmo
Fusobacterium mortiferum
Pathway
fmo03030
DNA replication
fmo03410
Base excision repair
fmo03420
Nucleotide excision repair
fmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4N19_06335
03410 Base excision repair
C4N19_06335
03420 Nucleotide excision repair
C4N19_06335
03430 Mismatch repair
C4N19_06335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fmo03032
]
C4N19_06335
03400 DNA repair and recombination proteins [BR:
fmo03400
]
C4N19_06335
Enzymes [BR:
fmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C4N19_06335
DNA replication proteins [BR:
fmo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C4N19_06335
DNA repair and recombination proteins [BR:
fmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C4N19_06335
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4N19_06335
MMR (mismatch excision repair)
DNA ligase
C4N19_06335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C4N19_06335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AVQ18726
LinkDB
All DBs
Position
1280764..1282794
Genome browser
AA seq
676 aa
AA seq
DB search
MERRNIVEKYIKELREKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEYKEKNS
PTEIVGATSLKETKFQKVAHKKPMLSLSNSYNEGDISDFIERVKKLLPEEKNLAYALELK
LDGLSLSIQYEEGKLVRAVTRGDGTVGEDVTENILEIESIPKILKEKVSIEIRGEVVLPL
SKFEELNKKRMENGEEVFANPRNAAAGTLRQLDSSIIKERGLDAYFYFLVDAQNYGVKTH
SESIEYLAKLGIKTTGVCEVLKNSSELISRIEYWGEKRESLDYETDGMVIKVDNIELWDK
LGNTTKSPRWAIAFKFPAKQVTTKILGVTWQVGRTGKVTPVAELEEVELSGSRVKRASLH
NYQEIERKDIRIGDSVFIEKAAEIIPQVVKAVKELRDGNEIIIKEPTHCPICNTKVEREE
GQVDIRCPNISCPGKIEGELIYFVSRDAMNIAGFGSKIVENMLRLGFIKNIVDIYELKNH
REELEKLEKMGKKSVDNLLTAIENSKTREYSKVLCALGIPFVGKTSAKLLADSSGNIDKL
MSMSVEELMEIEGIGDKMAQAIFDFFRDEEKKKLIEGLKAHGLTFIQERKEELPAEEKVF
TGKTFLFTGTLQNFTRNEIKEEIEKLGGKNLSAVSKNLDYLIVGEKAGSKLKKAQELGTV
KIITEEEFMKICGKKS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
attgagaggagaaatattgtggaaaaatatataaaagagttgagagaaaagataaaaaaa
tatagtgattactactatacaaataatgaaagtttaatatctgatgtagagtttgataag
ttgttagttgagttaaaggagttagaagaaaaatatccagagtataaggaaaaaaactct
cctacagaaatagtaggagctacaagtcttaaagaaacaaagtttcaaaaggtagcccat
aaaaaacctatgttaagtttatctaactcatataatgagggagatatatctgattttata
gagagagtaaaaaaacttttaccagaagagaaaaacttagcctatgctttagagttaaaa
ttagacggtttatccttaagtattcaatatgaagagggaaaacttgtaagagccgtaaca
agaggagatggaacagtaggagaagatgttacagaaaatattttggagatagaatctatc
cctaaaattttaaaagagaaagtaagcatagagataaggggagaagtggtattacctcta
tctaagtttgaagagttaaataaaaaaagaatggaaaatggggaagaagtttttgctaat
ccaagaaatgctgctgctggaactttaagacaattagattcaagtattataaaggaaaga
ggattggatgcctatttttattttttagtagatgctcaaaactatggagtgaaaactcat
agtgaaagtatagaatatcttgctaaactcggaataaagacaacaggagtatgtgaggta
ttgaaaaactcttctgaacttatatctagaattgagtattggggagaaaagagagaaagt
ttagattatgaaacagatggaatggtaataaaagtggacaatatagagctatgggataag
ttaggaaatactactaaaagccctagatgggcaatagcttttaaattcccagctaaacaa
gttacaacaaagatattaggagttacttggcaagtgggaagaacaggtaaagttactcca
gtagcagagcttgaagaggtagagttatcaggaagtagagtaaaaagagcaagtttacat
aactatcaagagatagagagaaaagatatcagaataggtgatagtgtatttatagaaaaa
gctgcagagataatacctcaagtagtaaaggctgtaaaggagttaagagatggaaatgaa
ataataataaaagagcctactcattgtccaatatgtaatacaaaggtagaaagagaagag
ggacaggtagatatcaggtgtccaaatataagttgtccaggaaaaatagagggagaattg
atctattttgtatctcgtgatgctatgaatatagctggttttggtagtaaaatagtagaa
aatatgttaagacttggatttataaaaaatattgtagatatatatgagttaaaaaatcat
agagaagaattagaaaaactagaaaaaatgggtaaaaaaagtgtggataatcttcttaca
gctattgaaaatagtaaaacaagagagtattcaaaagttttatgtgctttaggaatacct
tttgtaggtaaaacttcagcaaaacttttagctgattcaagtgggaatattgataaactt
atgagtatgagtgtagaggaactaatggagatagaaggaataggagataagatggcacaa
gctatctttgatttctttagagatgaagagaagaaaaagcttatagaggggttaaaagca
catggacttactttcattcaagagagaaaagaggagttaccagctgaagagaaagtattc
acaggaaaaacatttttatttacaggaacattacaaaatttcacaagaaatgaaataaaa
gaagagatagaaaaacttggtgggaaaaatctttctgctgtaagcaaaaatttagattat
ttaatagtgggagaaaaggcaggaagtaagctaaagaaagctcaagagttaggaactgta
aagataataacagaagaggagtttatgaaaatctgtggaaaaaagagttaa
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