Fuerstiella marisgermanici: Fuma_00704
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Entry
Fuma_00704 CDS
T04678
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fmr
Fuerstiella marisgermanici
Pathway
fmr03030
DNA replication
fmr03410
Base excision repair
fmr03420
Nucleotide excision repair
fmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fuma_00704 (ligA)
03410 Base excision repair
Fuma_00704 (ligA)
03420 Nucleotide excision repair
Fuma_00704 (ligA)
03430 Mismatch repair
Fuma_00704 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fmr03032
]
Fuma_00704 (ligA)
03400 DNA repair and recombination proteins [BR:
fmr03400
]
Fuma_00704 (ligA)
Enzymes [BR:
fmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fuma_00704 (ligA)
DNA replication proteins [BR:
fmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fuma_00704 (ligA)
DNA repair and recombination proteins [BR:
fmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fuma_00704 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fuma_00704 (ligA)
MMR (mismatch excision repair)
DNA ligase
Fuma_00704 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fuma_00704 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Bap31_Bap29_C
Zn_ribbon_NUD
ADSL_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
APZ91118
UniProt:
A0A1P8WAM5
LinkDB
All DBs
Position
965131..967146
Genome browser
AA seq
671 aa
AA seq
DB search
MTGNVKQEIEDLRAELERHNRLYYVDAAPEISDREYDRLMAELQRLEEAHPEFDSPTSPT
QKVGGEPIAGFQQVEHRVPMLSIDNAFEESELVNWDAGLQKAFGRENLEYTVEYKIDGVA
LALIYQDGELVQGVTRGNGAVGDDITSNAKVVAGVPLRLETETPPPVLEVRGEVVIFNEF
FAAFQAAQVAAGEEPFKNPRNAAAGALKLLDPKQARKRGLRFVAHGMGYVEGVEWPDYIS
FLNSIRQFGIPVTPDVATAVGIEKLKLAIDAMMEGVAHLPFEVDGIVIKLNSLAERDELG
STSKSPRWVRAYKWERYEAETKVQNISIQVGKTGTLTPVAELEPVQIDGTTVSRASLHNR
DELQRLGVMIGDTVLVEKAGKIIPHVLRVNEAARSGAERPFSFPEFCPECGAKVIQDEGG
VYVRCPNPTCPAQLRETLIFFASRPAMDIDGLGEKLVGQLLDAKLIDGIPSLYRLHEKRE
QLVALERLGEKSTDRLLGGLESSKQQPLWRLLTGLNIRHVGQSNARVLEAAFGTVDEIAA
QSVESLAAVDEIGPVIADSVHQFFASEIGRSLIDELRSVNLNLGSPVSKVAVKTEGPLVG
KTVVVTGTLPGMGRDEAKELIRQHGGKASGSVSKKTDFVLAGEKAGSKLTKAQELGIAIL
SEDDFRAMLEK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacagggaacgtcaagcaggaaattgaagatctgcgagcggagctggagcggcataac
cggctgtactatgtcgacgcggctccggaaatttcggaccgcgaatacgatcggctcatg
gccgaactgcagcggctggaagaagctcacccggaattcgattcgcccaccagtcctact
caaaaagtgggtggagaaccgatcgcggggttccagcaggttgaacatcgggttcccatg
ttgtcgatcgacaatgcgttcgaagaaagcgaacttgtcaactgggatgccggactgcag
aaagcgttcggtcgcgagaacctcgaatacacagtcgaatacaaaatcgatggcgtcgcc
ctggcgttgatctatcaggacggagaacttgtccagggcgtgacacgcggcaacggagcc
gtcggtgacgacatcacgtccaacgcaaaagttgttgccggtgttccgcttcgactggaa
acagaaacgcctccgcccgtgttggaagtgcggggcgaagttgtgatcttcaacgaattt
ttcgccgctttccaggccgctcaggtggctgccggtgaagagcctttcaagaaccctcgc
aatgcagccgcgggagcgctaaagctgctcgatcccaaacaggcgcgcaaacgcggcctg
cgatttgtggctcatggaatgggctacgttgaaggggttgaatggcctgactacatcagc
tttctgaattccattcgtcaattcggcattcctgtcacgcctgacgtcgccacggctgtc
ggtatcgaaaaactgaagcttgccattgatgcgatgatggaaggagtcgcgcacctgccg
tttgaagttgacggcattgtgatcaagctaaacagcctggccgaacgagacgaactcggc
agcacgtccaaaagtccgcgctgggtccgagcctataagtgggaacggtacgaagcggaa
acgaaggtgcaaaacatttcgatccaggtcggtaagacgggcacactgacgccggtcgcg
gaactggaaccggtgcagatcgacggcacgactgtttctcgggcaagccttcacaatcgt
gacgaactgcagcggctgggcgtcatgatcggcgacacagtgctggtggaaaaagcgggc
aaaatcattccgcacgttttgcgagtgaacgaagccgctcgatcgggagctgagcgaccg
ttttcatttcccgaattctgcccggaatgcggtgcgaaggtgattcaggacgagggtggt
gtctatgtccgctgcccgaacccaacgtgcccggctcaacttcgcgagacacttattttc
ttcgcatcccgtcccgcgatggacatcgacgggctgggtgaaaagcttgtcggccagctg
ttggacgcgaagctcatcgatggcattccttcgctgtaccggctgcacgaaaagcgagaa
cagttagtcgcattagaacggttgggtgagaagtcgacagatcggttgcttggtggcctt
gagtcgtcgaagcagcaacccttgtggcgtctgttgacggggctgaatattcgtcatgtg
gggcagagtaacgctcgagttctggaagcggcgttcggcaccgtcgacgaaattgcggct
caatctgttgagagtctggcggcggtggacgagattggccccgtgattgcagattccgtg
catcagtttttcgctagcgaaatcggacggagtttgattgacgaacttcgcagtgtgaac
ctgaacctcggttcgcccgtcagcaaagtcgcggttaagacggaaggccccctggtcgga
aagacggttgtcgtgacgggcacgctaccaggaatggggcgggatgaagcaaaagaactc
attcgccagcacggcggcaaagcgtctggcagcgtgtcaaagaaaacggactttgttctg
gcaggcgagaaagcgggcagtaagctgacgaaggcgcaggagttgggaatcgcgatcttg
tcagaggacgattttcgagccatgcttgagaaatga
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