Fenollaria massiliensis: M1R53_05210
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Entry
M1R53_05210 CDS
T08130
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fms
Fenollaria massiliensis
Pathway
fms03030
DNA replication
fms03410
Base excision repair
fms03420
Nucleotide excision repair
fms03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M1R53_05210 (ligA)
03410 Base excision repair
M1R53_05210 (ligA)
03420 Nucleotide excision repair
M1R53_05210 (ligA)
03430 Mismatch repair
M1R53_05210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fms03032
]
M1R53_05210 (ligA)
03400 DNA repair and recombination proteins [BR:
fms03400
]
M1R53_05210 (ligA)
Enzymes [BR:
fms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M1R53_05210 (ligA)
DNA replication proteins [BR:
fms03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M1R53_05210 (ligA)
DNA repair and recombination proteins [BR:
fms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M1R53_05210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M1R53_05210 (ligA)
MMR (mismatch excision repair)
DNA ligase
M1R53_05210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M1R53_05210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
RNA_pol_A_CTD
BRCT_2
DUF7501
Motif
Other DBs
NCBI-ProteinID:
UQK58640
UniProt:
A0A9E7DIN9
LinkDB
All DBs
Position
complement(1036687..1038657)
Genome browser
AA seq
656 aa
AA seq
DB search
MDRMEELIKKLEEYNYHYYVLDDPIVSDKEYDKLYDELVKLENETGTHLPYSPTQRVGDA
VLDKFVKHTHLGRLWSLDKAQSFDALRDWREKNLRFIEGYNETHSDKLPKPEYILEYKFD
GLTINLTYDEGILKMGATRGTGEVGEEIYEQVLTIKSIPLRVKYKGKFEVQGEGLMPLSK
LKEYNENNEVQLKNARNAAAGALRNLDVKETEKRHLITYLYNIAYIEGKEFQTQEEIVAF
IKDNALPVSKYHKKFSNMEDLLKEIEVQKEERLKQDFLTDGMVIKINDVKTQKLMGYTNK
FPRFAIAYKFEALETSTRIIGVEWNVGRSAKVTPTALLEPVDIGGVTIKRATLNNLDDIK
RKKLHLNERVLIRRSNDVIPEIMGPLKTDEEVYDIEQPKYCPYCHSKLYKEGVHYFCPNT
LGCKPQLVKTIVHFASKEAMNIDGFSEKTAELFLEKLNIDQVSMLYDLKEEDLLKLDGFK
EKKASNIISSIQNSKTVELKNFIYALSIANVGVKTSRDLAEHYKTIDNFLNASFDDLVAI
EDVGDITANEIVSFLTDETSKKSIQSLFDHGIKVLDVEDSGDKSLEGLKFVLTGTLENYT
RDELKNILENKGAKVQGSVSSKTDYVVVGENPGSKFDKAKTLNIKILHENDLKELI
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggataggatggaagaattaatcaagaagcttgaggaatacaactatcattactatgta
ctcgatgacccgatagtttctgataaagaatatgacaagttatatgatgagctagtgaag
cttgaaaacgagacaggaactcatttaccatactctccaacacaaagagttggcgacgct
gttcttgataaatttgttaagcatactcatcttggaaggctttggagccttgataaagca
caaagttttgatgcgctcagagattggcgcgagaagaatcttcgttttatagaaggatac
aatgaaacgcatagcgataaacttccaaaacctgagtatatacttgaatataaattcgat
ggtcttactattaatctaacttatgatgaaggcattttaaagatgggggcaacgagaggt
actggcgaagttggcgaagagatttacgagcaagtccttacaattaagtcaataccacta
agggttaaatacaaaggcaagtttgaggttcaaggtgagggccttatgccactatcaaaa
cttaaagaatataacgaaaacaacgaagtccagctaaagaatgcaagaaatgcggcggct
ggtgcacttcgtaaccttgatgtgaaagagactgaaaaaaggcacttaatcacttatctt
tacaatattgcttacatagaaggcaaagaatttcaaacgcaagaagagatagtcgctttt
ataaaagataatgcactgccagtttcaaaatatcacaaaaaattttctaatatggaagat
ttattaaaagagatagaagtgcaaaaagaagaaagacttaagcaagattttcttacagat
ggcatggttatcaagataaacgatgttaaaacgcaaaaacttatgggctacactaataaa
ttcccaagatttgcgattgcatataaatttgaggcacttgaaacatctactagaatcatt
ggtgttgagtggaatgttggtagaagtgctaaagttacgccaactgcactactagagccg
gttgatataggcggcgttaccataaagagagcgacacttaataatttggatgacatcaag
aggaaaaaacttcatttaaacgaaagagttttgattagaagatcaaatgacgttattcct
gagattatgggtccactaaagacagacgaagaagtttatgacatagagcagccaaagtat
tgtccatattgtcacagcaaactttataaagagggcgttcattatttctgcccgaatact
ttgggatgcaaaccgcaactagttaagaccatagttcactttgcttcgaaagaggccatg
aatatagatggctttagcgaaaaaactgcagaattattcttagaaaagctaaatatagat
caagtgtcaatgctatatgaccttaaagaagaggatttacttaaactagatggctttaaa
gagaaaaaagcaagtaatataataagttctatacaaaattcaaagacagtagagcttaaa
aattttatttacgctttatccattgccaatgttggcgttaagacgagccgtgatttagca
gagcattataaaactatagataatttcttaaatgcaagctttgatgatctagtggctatc
gaagacgtgggcgatataactgctaatgagatagtttcattcttaacagacgaaactagt
aaaaaatctatacaaagtctatttgatcacggaataaaagttttagacgtagaagatagc
ggcgataaatcacttgaaggacttaaatttgttttgactggaacacttgaaaattatact
agagatgaattaaaaaacattcttgaaaataaaggcgccaaggtacaaggctctgtctca
tcaaagacagactatgtagttgttggcgaaaaccctggttcaaaatttgataaagcaaag
actttaaatataaagatactacatgaaaatgatttgaaggagttgatatga
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