Ferrovum myxofaciens: HO273_06905
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Entry
HO273_06905 CDS
T06614
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fmy
Ferrovum myxofaciens
Pathway
fmy03030
DNA replication
fmy03410
Base excision repair
fmy03420
Nucleotide excision repair
fmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HO273_06905 (ligA)
03410 Base excision repair
HO273_06905 (ligA)
03420 Nucleotide excision repair
HO273_06905 (ligA)
03430 Mismatch repair
HO273_06905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fmy03032
]
HO273_06905 (ligA)
03400 DNA repair and recombination proteins [BR:
fmy03400
]
HO273_06905 (ligA)
Enzymes [BR:
fmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HO273_06905 (ligA)
DNA replication proteins [BR:
fmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HO273_06905 (ligA)
DNA repair and recombination proteins [BR:
fmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HO273_06905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HO273_06905 (ligA)
MMR (mismatch excision repair)
DNA ligase
HO273_06905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HO273_06905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QKE38492
LinkDB
All DBs
Position
complement(1507302..1509323)
Genome browser
AA seq
673 aa
AA seq
DB search
MDEIARLHLLQDKLKHYNQEYHGFDAPTIPDAEYDALYRELAALEARHPDQVRADSPTQQ
VGSLDLRRNVRLVRHREPMLSLNNGFDFHDLQEFDRRVRMGLGVEAVAYCCEPKFDGLAI
NLLYRGGTLVQGATRGDGEKGEEVTANLMTVKSIPRRMQGSEPWPEWLEVRGEVLMLKKD
FEQLNQRQTRAGERAFVNPRNAAAGALRQLDPAETARRPLVFLAYGVGGVSPGYELPDHQ
DALLRWLGTLGFPVAEEVQVVQGESGLRAFFENLGARRASLPYEVDGVVYKVNARIAQQR
LGFVTRAPRFALAHKFPAEEALSTVEAIEVQVGRTGTLTPVAHLKPVFVGGVTVMRATLH
NDEEIRRKDIRVGDQVWVRRAGDVIPEVVRVVRELRPADTVAFEMPLTCPVCGCPARRLP
EEISWRCSGGLHCPAQRKQALLHFVGRRAMNVEGLGEKLVDALVERAWVTEPADLYRLTL
EQWASLPRMAMKSAENLVQSLERSKETTLARFLFALGIRQIGERTAQDLALHFGTLEDVM
EADEARLQEVVEIGPVVAQSLREFFSGERNRQIIAHLRAQGIHWYENTRNRQAVQVLAGL
TFVLTGTLARYSREEARERIEQAGGKVVGSLSRSTHYLVVGRDPGSKVAQAQKLGIPMLD
EDQWDQLFKEINA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaattgcccgtctgcatctactgcaggataaactgaagcattacaatcaggaa
taccacgggttcgatgcgcccacgattcccgatgcggaatatgatgcgctgtatcgggaa
ctggcggcattggaagcccggcatcctgatcaggtcagggcggattcccccactcagcaa
gtgggatctctggatttgcgccgcaacgtgcgcctggttcgccaccgtgaacccatgctg
agtctgaataatggatttgattttcacgatctccaggaatttgatcggcgggttcgaatg
ggattgggcgtggaggcggtggcctattgttgtgagccaaaattcgatggtctggccatc
aacctgttgtatcgtgggggcactctggtgcagggtgccacgcgcggcgatggtgagaag
ggagaagaggtaactgccaatctgatgacggtgaaaagtattccccggcgtatgcagggt
tctgaaccctggccagagtggttggaggtgcgcggagaagtcctgatgctcaagaaggac
ttcgaacaactcaatcagcgtcagacaagggcaggagaacgagccttcgtcaatccgcgc
aatgccgccgcaggcgctttgcgccaactggacccggcagaaacggcccgtcgtcccctg
gtctttctggcttatggtgtgggcggagtctctcctggctatgaactgccggatcatcag
gatgcgttactgcgttggctgggcacgctggggtttcccgtggcagaagaggtccaggtg
gtccagggcgaaagcgggctccgggcgttttttgagaatctgggcgcgcgccgcgcttcc
ctgccttacgaagtggatggggtggtctataaggtcaatgcacgcattgcccagcagagg
ttggggtttgtcacccgtgcgccgcgttttgctctggcgcacaagtttcctgccgaagag
gcattgagtacggtggaagccatcgaggttcaagtggggcgtaccggtacgttgactcct
gtggcgcatttgaagcccgtattcgtggggggagtgacggtaatgcgcgcaaccctgcat
aatgacgaggaaattcgtcgtaaggatatccgggtgggagatcaggtctgggtccgccgt
gcaggcgatgtcattccggaagtggtgcgggtggttcgggaacttcgccctgcagacaca
gtggcttttgagatgcccctcacctgtccggtatgtggatgtccagcgcgacggcttccg
gaggaaatttcctggcgctgtagtggaggcctccactgcccggctcaacgcaagcaggca
ttactgcattttgtcggacgacgtgccatgaatgtggaaggactgggtgagaaactggtg
gatgctctggtggaacgcgcctgggtgacggaacctgccgatctttaccgcctgaccctc
gaacaatgggcttcattgccccgcatggcgatgaaatccgcagaaaatttggtgcaatcc
ctggaacgtagcaaggaaaccactttggcacggtttctgttcgccttgggaattcgccag
atcggcgaacgcacggcccaggatctggcacttcatttcgggacgctggaagacgtgatg
gaagccgacgaagcccgtttgcaggaagtggtggagattggtcccgtggtagcccaatcc
ctgcgagaatttttttccggagaacgcaatcggcagatcatcgcgcacctgcgtgcccag
ggtatccactggtacgaaaatacccggaatcggcaggctgtgcaggttttggcgggtttg
acctttgtcttgaccggaactctggcccgttattcccgggaggaagccagggaacgtatt
gagcaagccgggggaaaggtggtgggcagtttgtcccgttcgactcattatctggtggtg
gggcgggatccgggcagcaaggtcgcgcaggcacaaaaattgggcatcccgatgcttgat
gaggatcagtgggatcaacttttcaaggaaatcaatgcatga
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integrated database retrieval system
