Fusobacterium vincentii 3_1_36A2: HMPREF0946_01311
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Entry
HMPREF0946_01311 CDS
T02822
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fnc
Fusobacterium vincentii 3_1_36A2
Pathway
fnc03030
DNA replication
fnc03410
Base excision repair
fnc03420
Nucleotide excision repair
fnc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0946_01311
03410 Base excision repair
HMPREF0946_01311
03420 Nucleotide excision repair
HMPREF0946_01311
03430 Mismatch repair
HMPREF0946_01311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fnc03032
]
HMPREF0946_01311
03400 DNA repair and recombination proteins [BR:
fnc03400
]
HMPREF0946_01311
Enzymes [BR:
fnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF0946_01311
DNA replication proteins [BR:
fnc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF0946_01311
DNA repair and recombination proteins [BR:
fnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF0946_01311
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0946_01311
MMR (mismatch excision repair)
DNA ligase
HMPREF0946_01311
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0946_01311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
UPF0758_N
EAD10
PdxA
Ribosomal_S13
HTH_22
Motif
Other DBs
NCBI-ProteinID:
EEU33238
UniProt:
C7XR15
LinkDB
All DBs
Position
2060913..2063003
Genome browser
AA seq
696 aa
AA seq
DB search
MEIKKRIEELKNNQTGLTLYPSQELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDM
LLKELESLEEKYPQYKEISSPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIE
RIKKKIPKEQELKYCLEVKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASII
KTLPQAIDMEIRGEVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRG
LDAYFYFLVEADKLDLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENL
PYETDGLVIKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPV
AELQEVELSGSKVKRASLHNISEIQRKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEK
VIEEPVCCPVCNHKLEREEGLVDIKCINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEK
FIDLGYIKTVVDIFDLKEHREALENIDKMGKRSIENLLNSIEESKNRDYDKVIYSLGIPF
IGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFKKEKNQKIIESLKEK
GLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDY
LIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaaaaaaagaattgaagaattaaaaaataatcaaacagggcttacactttac
ccatcacaagaattaaatgatttagaaaaaatagttaagttaagagaggatttagataaa
tacagaaattcttattacaatgataatataagtctaatctcagactatgaatttgatatg
ttattaaaagaattggaaagtttagaagaaaaatatccacagtataaagaaatttcttct
ccaactacatcagtgggagcaagtttaaaagaaaataaatttaagaaagttgagcataca
cacccaatgttaagtttagcaaatagctataatattggggaaattgtagattttattgaa
agaataaaaaagaaaattccaaaagaacaagaattaaaatattgtttagaagttaaactt
gatggcttatctatcagtctaacttacagacaaggaaaacttgtcagagctgtaactcgt
ggagatggacttataggagaagatgttacagaaaatattttagagatagcgagcataatt
aaaactttaccacaagctattgatatggaaatcagaggggaagttgtactacctttggct
agctttgagaaattaaataatgaaaggttagaaaaaggagaagaactttttgccaaccca
agaaatgcagcaagtggaactttaaggcaattagattcaaaaattgtaaaaggaagagga
ttagatgcctatttctatttcttagttgaagcagataaattagatttaaaatctcatagt
gaaagtataaaattcttagaatctatgggaataaaaacaacaggaatatttgagctttta
gaaacttcaaaagatatagaaaaaagaatagattattgggaaaaagaaagagaaaattta
ccttatgaaacagatggtttagtaataaaggttgacgaaattaatctttggaatgaaatt
ggttacacaagtaaaactcctagatgggcaatagcatataaatttccagcacaccaagtt
tcaactatattaaatggtgtaacttggcaagtaggaagaactggaaaattaacacctgtt
gcagagcttcaagaagttgaattatcaggaagtaaggtaaaaagagcaagtttacataat
ataagtgagattcaaagaaaagatataagaataggagatagagtctttatagaaaaagct
gctgagattatcccacaggttgtaaaagctataaaagaggaaagaactggaaatgaaaaa
gtaatagaagaacctgtttgttgccctgtatgtaatcataaacttgaaagagaagaaggt
ttggttgatataaaatgtatcaatgaagaatgtcctgcaaaagttcaaggagaaatagaa
tactttgtttcaagagatgctttaaatattatggggctaggctcaaaaatagttgagaaa
tttatagatttaggatatataaaaactgttgttgatatttttgatttaaaagaacataga
gaagccttagaaaatattgataagatgggtaaaagaagtatagaaaatcttttaaattca
atagaagaaagtaagaatagagattatgataaagttatttattcattaggaatacctttt
ataggaaaggttgcttctaagatattagcaaaagcttcaaaaaatattgataagttaatg
actatgacttttgaagaattgacttcaatagaaggaattggagaaatagctgctaatgaa
attatagctttttttaaaaaagaaaaaaatcaaaaaattatagaaagtttaaaagaaaaa
ggtttaaaatttgaaataaaagaaagtgaaacaaatgttcaaaatataaatcctaatttt
gctggaaaaaatttcttattcacaggaacattaaaacattttacaagagaacaaataaaa
gaagaaattgaaaaactaggtgggaagaatttaagttcagtaagtaaaaacttagattat
ttgatagttggtgaaaaagctggaagtaaattaaaaaaagcccaagagattccaactata
aaaatattaactgaggaagagtttattgaactaaaagataaatttgactaa
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