Flavobacterium nakdongensis: RF683_06605
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Entry
RF683_06605 CDS
T10681
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03030
DNA replication
fnd03410
Base excision repair
fnd03420
Nucleotide excision repair
fnd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RF683_06605 (ligA)
03410 Base excision repair
RF683_06605 (ligA)
03420 Nucleotide excision repair
RF683_06605 (ligA)
03430 Mismatch repair
RF683_06605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fnd03032
]
RF683_06605 (ligA)
03400 DNA repair and recombination proteins [BR:
fnd03400
]
RF683_06605 (ligA)
Enzymes [BR:
fnd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RF683_06605 (ligA)
DNA replication proteins [BR:
fnd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RF683_06605 (ligA)
DNA repair and recombination proteins [BR:
fnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RF683_06605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RF683_06605 (ligA)
MMR (mismatch excision repair)
DNA ligase
RF683_06605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RF683_06605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
EcoRI
Auto_anti-p27
DNA_ligase_A_M
HHH
RNA_lig_T4_1
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WMW77165
LinkDB
All DBs
Position
complement(1491672..1493663)
Genome browser
AA seq
663 aa
AA seq
DB search
MNLLETIKALREELNQHNYNYYVLDNPTISDYEFDIKLKQLQDLESQNPDFFDESSPTQR
VGGTITKNFETIAHEYRMYSLDNSYSREDVLDWVNRCQKILGNVDLEFTCELKYDGASIS
ITYENGKLKRALTRGDGFQGDDVTNNIKTIKSIPLVLKGNYPSKFDIRGEIILPLEGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYGLIGNNLGFSSQFEGLKK
ATEWGFKVPKQSKCVNSIEQVFEFIEYWDTHRHTLPYETDGVVVKINNLHYQEELGYTAK
SPRWAIAYKFKAEQVSTVLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIQ
KLDIRIGDEVYVEKGGEIIPKIIGVAKRRNQLDPTVYITHCPECHTQLIRNEGEAQHYCP
NFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLYNAGLIKNYADLYTLKKNDIVILDR
MADKSADNLLNGIEQSKTISFDRVLYALGIRYVGETVAKKLAKHYKTIDALAQATLIDLI
TVDEIGERIAQSVLDFFQKQSNIENITRLKEYGLQFELQEINTMVSNVLDGKIFVVSGVF
ELFSRDELKKAIEDNGGKVGSSISAKTNYVIAGANMGPSKLEKANQLKVEIITEYQFRDM
IHE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttagaaactattaaagcgttaagagaagaattaaatcaacataattataat
tattatgtgcttgataatcctactatttcagattatgaatttgatataaagttaaaacaa
cttcaagatttagaatctcaaaatcccgacttttttgacgaaagttcgccaactcaacgc
gtaggaggaacgattacaaaaaattttgaaaccattgctcacgaatatagaatgtattcg
ttagataattcttattctcgtgaggatgtactagattgggtaaatcgttgtcaaaaaata
ttagggaatgttgatttagagtttacttgtgaactcaaatatgatggtgcttctattagt
attacctatgaaaatggtaagttgaaacgcgctttgactcgaggtgatggatttcaaggc
gatgatgtaacaaataacattaaaacaattaaatcgattcccttagttttaaaaggaaat
tatccttcaaaatttgatattagaggagaaattattttgcctttagaaggatttgaaaaa
atgaatcaagaattgatagaaattggagaaacaccttattcaaatccaagaaacacagca
tcaggaagtttaaaattacaagatagtgctgaggtggcaaaacgtcctttagattgtttg
ttatatgggttaataggaaataatttaggattttcgtcacaatttgaaggattgaaaaaa
gctaccgaatggggatttaaagtgccaaaacaaagcaaatgtgtcaattctatcgaacag
gtttttgaatttatagagtattgggatacacaccgtcataccttgccttatgagacagat
ggggtggtggttaaaataaataatttacattaccaagaagagttaggatatacggcaaaa
tcaccgcgttgggcgattgcatataagtttaaagccgaacaagtaagtaccgttttaaat
tctatttcttatcaagtgggacgtacaggggctataacgcctgtcgcaaatttagagccc
gttcaacttgcaggaactattgtgaaaagagcttcattacataatgcggaccaaattcaa
aaattagatataagaattggtgatgaggtgtatgtggaaaaaggaggcgaaattattccc
aaaattattggtgtagccaaaagaagaaatcaattagaccccactgtttatattacccat
tgcccagaatgccatacacaacttatcagaaatgaaggagaagcacagcattattgtcct
aatttttatggctgtccaccgcaaatcatcggtagaattcaacattttattacccgaaaa
gccatggatatagatggtttaggtggtgaaacagtagctttattgtacaatgctggattg
atcaaaaattatgcagatttgtatacattaaaaaagaatgacattgttattctagataga
atggctgataaatctgcagataatttattgaacggaattgaacaatctaaaactatttct
tttgatagagtattatatgccttaggtattcgttatgttggggaaactgtggcaaaaaaa
ttggccaaacattataaaacgattgatgctttagctcaagccactttaattgatttaatt
actgttgatgaaataggggagcgtattgcccaaagtgtgcttgattttttccaaaaacaa
agcaatattgaaaatattactcgtttaaaagaatatggtcttcaatttgagttacaagaa
ataaacactatggtttctaacgtgttagatggaaagatatttgtggtttcaggtgttttt
gaattattttctagggatgagcttaaaaaagctattgaagacaatggcggaaaagtagga
agttctatttctgcaaaaactaattatgtaattgctggagctaacatggggccttcaaaa
ttagaaaaagctaatcaattaaaagttgaaattattacggaatatcaatttcgagatatg
atacatgagtaa
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