Flavobacterium nackdongense: E1750_03805
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Entry
E1750_03805 CDS
T06713
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fnk
Flavobacterium nackdongense
Pathway
fnk03030
DNA replication
fnk03410
Base excision repair
fnk03420
Nucleotide excision repair
fnk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E1750_03805 (ligA)
03410 Base excision repair
E1750_03805 (ligA)
03420 Nucleotide excision repair
E1750_03805 (ligA)
03430 Mismatch repair
E1750_03805 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fnk03032
]
E1750_03805 (ligA)
03400 DNA repair and recombination proteins [BR:
fnk03400
]
E1750_03805 (ligA)
Enzymes [BR:
fnk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E1750_03805 (ligA)
DNA replication proteins [BR:
fnk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E1750_03805 (ligA)
DNA repair and recombination proteins [BR:
fnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E1750_03805 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E1750_03805 (ligA)
MMR (mismatch excision repair)
DNA ligase
E1750_03805 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E1750_03805 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
EcoRI
RNA_ligase
THP2
Motif
Other DBs
NCBI-ProteinID:
QBN17963
UniProt:
A0A4P6YCD1
LinkDB
All DBs
Position
complement(982242..984245)
Genome browser
AA seq
667 aa
AA seq
DB search
MDIQNTIQTLREELNRHNHNYYVLDTPTISDFEFDQKLKQLQDLENTHPEYFDENSPTQR
VGGAITKNFETVKHEHRMYSLDNSYSKEDLLDWENRIQKVLGEVDLEYTCELKYDGASIS
ITYENGKLVRAVTRGDGVQGDDVTNNIKTIKSVPLQLNGNFPAKFDIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFLIGNKLPFQSQFEGLET
ARNWGFKVPKESGLARNMEEVFQFIAYWDVHRHQLPYETDGVVIKVNRFQHQEELGFTAK
SPRWAIAYKFKSEQVSTRLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRIGDTVFVEKGGEIIPKIIAVDFSKRSENSEQTKYITHCPECQTQLIRGESEANHY
CPNFYGCPPQIIGRIQHFISRKAMDIEGLGGETVALLFHNGLVQNYADLYLLTVEQILPL
ERMAQKSAENLVRGVENSKNIPFERVLYALGIRFVGETVAKKLAKHYKSIDSLREASLMD
LVLVDEIGERIAQSVLDFFENQENSVIIERLKRYGIQCETVEIINPNATEKLSGKTFVVS
GVFEEFSRDDLKKAIEDNGGKVGSSISAKTDYVVAGANMGPAKLEKAVKLNVPIISEIDF
KKMLHEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggacattcaaaacacaattcagactttacgagaggaattaaatcggcacaatcacaat
tattatgtgctggacacacctacaatttctgattttgaatttgatcaaaaactcaagcaa
cttcaagacttagaaaatacccatcccgaatattttgatgaaaactctccaactcaacgg
gtgggaggggcgatcactaaaaattttgaaacggttaaacacgagcatagaatgtattcg
ttggataattcgtattcaaaagaggatttacttgattgggaaaataggattcaaaaagtg
ctcggtgaagttgatttagaatatacttgtgaattgaaatacgatggagcatcaattagt
attacttacgaaaatggaaaactagttcgggctgtcacccgtggtgatggggttcagggt
gatgatgtaacgaataatattaaaacgattaaatcggttcctctacagttaaatgggaat
tttccagccaaatttgatattcgaggggagattattttgccttttgccggtttcgagaaa
atgaaccaagaattgattgaaattggtgaaacaccttattctaatcccagaaatacagct
tcgggaagtttgaaattgcaggatagtgcggaagtggcaaaacgaccacttgattgtttg
ttgtattttctaattggcaacaaactgccttttcagtctcaatttgaaggtttagaaacg
gcgagaaattgggggttcaaagtgcccaaagaatctggtttggcacgcaatatggaagaa
gtgttccagtttatagcctattgggatgttcacagacatcaacttccttatgaaaccgat
ggtgtggtgatcaaagtgaatcgttttcaacaccaagaagaattgggatttacggccaaa
tcgcctcgctgggcaattgcttacaaattcaaatccgaacaagtttcaacgcgattgaac
tcgatttcctatcaagtgggaagaacgggagctataacgcctgttgccaatttagaacct
gtacaattggctggaacaatagtaaaaagggcttctttgcacaatgcagaccaaatcgaa
aagttggatattcgcattggcgataccgtttttgtggaaaagggaggagagatcattcca
aaaatcatagctgttgatttcagtaaacgatctgaaaattcagagcaaacaaaatacatt
actcattgtcccgaatgccaaactcaattgattcgtggcgaaagtgaagccaatcattat
tgtcccaatttttatggttgtccaccccagattataggtagaattcagcattttatttct
agaaaagcgatggatatcgaaggtcttggcggcgaaacggtggcgttattattccacaac
ggattggttcaaaattacgccgatttgtacctattgacggtagagcaaattttgccatta
gaaagaatggcacaaaaatcggctgaaaatttagtccgtggagtcgaaaattcaaaaaat
attcctttcgaacgtgttttgtatgcccttgggattcgtttcgtgggagaaactgtagcc
aaaaaattggctaaacattataaaagcatagactcgttgcgtgaagccagcttgatggat
ttagttttggttgatgaaattggagaaagaattgcgcaaagtgttcttgatttctttgaa
aatcaagaaaatagcgttataatagagcgattaaagcgctacggcattcaatgtgaaacc
gttgaaattataaatcccaatgcgacagagaaactttcaggcaaaacctttgtagtctct
ggtgtctttgaagaattttcgagagacgatttgaagaaagccatcgaagataatggagga
aaagtaggcagttcgatttcagccaagaccgattatgtagtggctggggccaatatgggg
cctgcaaaattagaaaaggcagtcaaattaaatgttccaattatttcggaaatcgatttt
aaaaaaatgcttcatgagggctaa
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