Francisella noatunensis subsp. noatunensis: FSC774_07240
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Entry
FSC774_07240 CDS
T07065
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fnn
Francisella noatunensis subsp. noatunensis
Pathway
fnn03030
DNA replication
fnn03410
Base excision repair
fnn03420
Nucleotide excision repair
fnn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSC774_07240 (ligA)
03410 Base excision repair
FSC774_07240 (ligA)
03420 Nucleotide excision repair
FSC774_07240 (ligA)
03430 Mismatch repair
FSC774_07240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fnn03032
]
FSC774_07240 (ligA)
03400 DNA repair and recombination proteins [BR:
fnn03400
]
FSC774_07240 (ligA)
Enzymes [BR:
fnn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSC774_07240 (ligA)
DNA replication proteins [BR:
fnn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSC774_07240 (ligA)
DNA repair and recombination proteins [BR:
fnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSC774_07240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSC774_07240 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSC774_07240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSC774_07240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
QOG55191
LinkDB
All DBs
Position
complement(1421896..1423932)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISIDYKTLTKAQLKSYVDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDL
VDDNPQLKPSNSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSYLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDIIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPV
CDSAIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGAKSSQNVLDAITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFCSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDSLNVQIVDELLGNSISIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGNNAGSKLTK
AQDLGVEVIFEEDLQNLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatctctatagactataaaactttaactaaagcacaattaaaa
tcatatgttgatgatcttgcagagtatctaggtgaacaaagctatttgtatcatactata
gataagccagttattactgactcagactatgataagttattccgattattacaagattta
gttgatgataatccgcagcttaagccatcaaactcagtattagatcgtgttggaggtgat
gttttagcaggatttgaaactatcaaacataagaagaaaatgacatctctggcaaatgtt
tttagtctagaggagttgcgtgatttttatgacaaaatagagtacgacattgagcttgaa
tgtgaacctaaaatggatggcttggctattagtatcttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtatccgaaaatgtcaaaacc
atccgtaatgtcccacttaaactaaatacttcaaatcctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttatctatctcttaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcgaagcgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacctattacaaagctttggc
tttactatcagtgataatatgtttttggcaaaaaacttctcagaagttgaggtgtatcac
cataagatgagtcatcagcgtgctgatttagcttatgatattgatggtttagtttttaag
gttaataatattaaattacaagatattatcggctacactgctagaggacctaagtgggct
atagcatataagttcccagctgaagaggtggagtcagaagttctaaatgtagagtttcaa
gttggcagaacaggagcaattacaccagttgcaagacttaagccggtagcagttggtggt
gtgatagtttcaaatgcaaccttgcataatatcaatgaaattaaacgcaaagatatccga
gttggtgatagagtaatcgtacgtagagcaggggatgtgattccagaagtggtcaaaagc
ttaccacaatatcgtaagtctgatgcacagatggttgaaatgccaacaaattgtccagtt
tgtgattcagcaattgagaatatcaacgatcaggctatatatcgttgtacaggaggatgg
cattgtcaagctcaaactactgagcgtttgaagcacttcgtctcacgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcagatttgatcaagtat
ccagctgatatttacaaacttaattttgagcaattgacaggcttagaaagaatgggtgct
aaatcatcgcaaaatgttttagacgctatcacaaaaagtaaagagccaagcttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtatcatcagaagctttagccaat
catttttgtagtttagaaagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattttggcaagattccctaaatgta
caaattgttgatgaactattgggcaattctattagtatccaaaatccagaaaaaattgag
caagcgcataatgagagttttacaaataaaacaattgttattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaactgatatggttatttgtggtaataatgctggaagtaagcttaccaaa
gctcaagatttaggtgttgaggttatttttgaagaagatttgcaaaatttgttatga
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