Fervidobacterium nodosum: Fnod_0182
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Entry
Fnod_0182 CDS
T00579
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fno
Fervidobacterium nodosum
Pathway
fno03030
DNA replication
fno03410
Base excision repair
fno03420
Nucleotide excision repair
fno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fnod_0182
03410 Base excision repair
Fnod_0182
03420 Nucleotide excision repair
Fnod_0182
03430 Mismatch repair
Fnod_0182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fno03032
]
Fnod_0182
03400 DNA repair and recombination proteins [BR:
fno03400
]
Fnod_0182
Enzymes [BR:
fno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fnod_0182
DNA replication proteins [BR:
fno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fnod_0182
DNA repair and recombination proteins [BR:
fno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fnod_0182
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fnod_0182
MMR (mismatch excision repair)
DNA ligase
Fnod_0182
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fnod_0182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
DNA_ligase_ZBD
HHH_3
BRCT_2
HHH_8
5_3_exonuc
UPF0758_N
DUF445
PRKG1_interact
Motif
Other DBs
NCBI-ProteinID:
ABS60049
UniProt:
A7HJG6
LinkDB
All DBs
Position
186286..188331
Genome browser
AA seq
681 aa
AA seq
DB search
MVSEKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPELKTPDSP
TQRVGGQLIEGFETVEHSEPMLSLDNTYNENEIRNFHERIRKVVRDVQYVAELKIDGVSI
ALRYENGLLVRAITRGDGLRGDDVTANVKTVKSIPLRLPEPLTIEVRGEIFMPVQYFEEF
NRQREEEGLLPFANPRNATAGTLHLLDPSQVAQRKLDSFMYYIVKPQQYDLKTQWDALKF
LEKLHFKVNPHSKLLSSIEEVIDYWKEWTEKRKKLEYWIDGVVVKVNDFEQQNELGWTAK
SPRWAIAFKFPAQQVRTKVLNITFQVGRTGTITPVAEFEPVELEGSIVKRASLHNFDYIK
ENDIRVGDYVFIEKAGGIIPQISYVLKELRDGDEIETVPPEKCPECGGPVGKESGEYVAY
KCLNPHCPAKLKRHIEVFVSRQAMDIQGLGPKIISKIVDAGLVKDIADLYYLNIFDLAQI
SGLGPKMISNILSEIEKSKQNPIEKLLVGLGIPGVGEKIAKVLAKKYKSMEELSKADIKE
LSEIEGIGEDIAKNIVEYFNSPKTKEILEKLRKAGVNLESAETTTSNILDGLTFCVTGTL
ENFSREEIKRFIESLGGHFTDNLTKKTDYLLVGTNPGSKLEKAKKFGVKVLNEQEFLEML
EKKGVELKESWKKPKPKDTLF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggtttctgaaaaaataaaacaggaggtagaaaagctaagaaaagaaattgagtaccat
aattacagatactatgttcttgctcagccagtcataagtgatgaagaatacgataaattg
atgaaacgattaatggagttagaggaaaaatatcctgagttaaaaactcccgattcacca
acacaaagagttggtggacagctgattgagggatttgagacagttgaacacagcgaacca
atgctcagccttgataatacatacaacgaaaatgaaataaggaattttcacgaaagaatt
agaaaagttgttagagatgttcaatacgttgcagaacttaaaattgacggagtatctatt
gctttgagatatgagaatggtcttttagtaagggctatcacaagaggcgatgggttaaga
ggcgatgatgttactgcaaatgtcaaaacagttaaatcaattccgcttagacttcccgaa
cctctaacgatagaagtacgtggtgaaatattcatgccagttcaatattttgaagaattt
aatcgacaacgtgaagaagagggtttactgccatttgctaatccaaggaacgcaacggcg
ggaacgcttcacctacttgatccatcacaagttgctcaaagaaaattggattccttcatg
tactatattgtaaaaccacaacaatacgatttgaaaactcaatgggatgcgcttaagttt
ttggaaaaattacatttcaaagttaatccacatagtaaattattaagctcgatagaagaa
gtgatagattattggaaagaatggaccgaaaaaaggaagaaacttgagtattggatagat
ggtgttgtagtaaaggttaacgattttgaacagcaaaacgaacttggttggactgctaaa
tcaccacgttgggcaattgcctttaaatttccagcgcaacaagttagaacgaaggtctta
aatatcacattccaggtaggaagaacagggactattacacctgttgcggagtttgaaccg
gttgaacttgaaggtagcatagttaagagggcttctttgcacaattttgactatataaaa
gaaaatgatatacgtgtaggagattatgtttttatagaaaaagctggaggtataattcca
cagatttcgtatgtcttaaaagaattacgtgacggtgatgaaatagaaactgttccacca
gaaaaatgtcccgaatgtggaggacctgttggtaaagagtcgggagaatacgtagcttac
aaatgtctgaatccacattgcccagcaaaattgaaaagacatattgaagtatttgtatca
cgtcaagcgatggatatacaaggtcttgggccaaagattatttctaagattgttgatgct
ggattagttaaggatatagcagatttatattatttaaatatctttgatttagcgcaaata
agcggacttggtccaaaaatgatatcaaatatactaagtgagatagaaaaatcaaaacaa
aatccaattgaaaaattgctagttggacttggaataccaggtgttggtgaaaagattgca
aaagtgcttgccaaaaagtataaaagcatggaagaactttcaaaagcagatataaaagaa
ttgagtgaaattgaaggaattggagaagatatcgctaagaatatagtcgaatatttcaat
tcgccaaagacaaaggaaatattggaaaaattacgaaaagctggagtaaatctcgaaagt
gctgaaactacaacttcaaatattctagatggacttacattttgtgtaactggaaccttg
gagaatttttcaagggaagagataaaacgctttatagaatcacttggtggacattttacg
gataaccttactaagaaaacagattatcttctagtaggcacaaacccgggaagcaaatta
gaaaaagcgaaaaagtttggtgttaaagttttgaatgaacaagaatttttagaaatgctt
gaaaagaaaggagttgaactcaaagaatcgtggaaaaagccgaaaccaaaagatacgctg
ttttag
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