Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN1717
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Entry
FN1717 CDS
T00077
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03030
DNA replication
fnu03410
Base excision repair
fnu03420
Nucleotide excision repair
fnu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FN1717
03410 Base excision repair
FN1717
03420 Nucleotide excision repair
FN1717
03430 Mismatch repair
FN1717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fnu03032
]
FN1717
03400 DNA repair and recombination proteins [BR:
fnu03400
]
FN1717
Enzymes [BR:
fnu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FN1717
DNA replication proteins [BR:
fnu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FN1717
DNA repair and recombination proteins [BR:
fnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FN1717
NER (nucleotide excision repair)
GGR (global genome repair) factors
FN1717
MMR (mismatch excision repair)
DNA ligase
FN1717
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FN1717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
EAD10
UPF0758_N
Ribosomal_S13
Dynactin_p22
HTH_22
Motif
Other DBs
NCBI-ProteinID:
AAL93832
UniProt:
Q8RI94
LinkDB
All DBs
Position
213290..215380
Genome browser
AA seq
696 aa
AA seq
DB search
MEIKKRIEELKNNQTGLTFYSSQELNDLEKIVKLREDLNKYRDSYYNDNKSLISDYEFDI
LLKELESLEEKYPQYKEISSPTTSVGASLKENKFKKVEHLHPMLSLANSYNIGEIVEFIE
RIKKKIPKEQELKYCLEVKLDGLSISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIV
KTLPQAIDMEIRGEVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRG
LDAYFYFLVEADKLGLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRINYWEKERESL
PYETDGLVIKVDEINLWDEIGYTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPV
AELQEVELSGSKVKRASLHNISEIQRKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEK
VIEEPTCCPICNHKLEREEGLVDIKCINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEK
FIDLGYIKTVVDIFDLKNHREALENIDKMGKKSIENLLNSIEESKNRDYDKILYALGIAE
IGKVTSKILAKASKNIDKLMAMTFEDLTSIEGIGEIAANEIIAFFTKEKNQKIIQGLKEK
GLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDY
LIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaaaaagagaattgaggaattaaaaaataatcaaacaggacttacattttac
tcatcacaagaattaaatgatttagaaaaaatagttaaattaagagaggacttaaataaa
tacagagattcttattacaatgataataaaagtctaatttcagactatgaatttgatatt
ttattaaaagaactagaaagtttagaagaaaaatatccacaatataaagaaatttcttct
ccaactacatcagtgggagcaagtttaaaagaaaataaatttaagaaggttgaacatctt
cacccaatgttaagtttagcaaatagttataatattggggagatcgtagagtttattgaa
agaattaaaaagaagattccaaaagaacaagaattaaaatattgtttggaagttaaactt
gatggcttatctatcagtctaacttacagacaaggaaaacttgttagagctgtaactcgt
ggagatggatttattggagaggatgttacagaaaatattttagagatagcaagtattgtt
aaaaccttaccacaagctattgatatggaaatcagaggagaagttgttttacctttggct
agttttgaaaaattaaataatgaaagattagaaaaaggcgaagaactttttgccaatcca
agaaatgcggcaagcggaactttaagacaattagattctaaaattgtaaaagatagaggt
ttagatgcctatttctatttcttagttgaagcagataaattaggtttaaaatctcatagt
gaaagtataaaattcttagaatctatgggaataaagacaacaggaatatttgaactttta
gaaacttcaaaagatatagaaaaaagaataaattattgggaaaaagaaagagaaagtctt
ccttatgaaacagatggcttggtaataaaggttgatgaaattaatctttgggatgaaatt
ggctatacaagtaagacacctagatgggcaatagcatataaattccctgcacatcaagtt
tcaactgtattaaatgatgtaacttggcaagtgggcagaactggcaaattaacaccagtt
gcagaacttcaagaagttgagctatcaggaagtaaggtaaaaagagcaagtttacataat
ataagtgaaattcaaagaaaagatataagaataggggacagagtctttatagaaaaggct
gctgaaattattccacaggttgtaaaagctataaaagaggaaagaactggaaatgaaaaa
gtaatagaagagcctacttgttgccctatatgtaatcataaacttgaaagagaagaaggc
ttagttgatataaaatgtatcaatgaagaatgtcctgcaaaagttcaaggagaaatagaa
tattttgtttcaagagatgctctaaatattatggggctaggttcaaaaatagttgaaaaa
tttatagatttaggttatataaaaactgttgtagatatttttgatttaaaaaatcataga
gaagccttagaaaatatcgataaaatgggtaaaaaaagtatagaaaatcttttaaattca
atagaagaaagtaaaaatagggattatgataaaattttatatgctttgggaatagctgaa
attggaaaagttacttctaagatattggcaaaagcttctaaaaatattgataagctaatg
gctatgacttttgaagatttaacttcaatagaaggaattggagaaatagccgccaatgaa
ataatagctttctttactaaggaaaaaaatcaaaaaattatccaaggtttaaaggaaaaa
ggtttaaaatttgaaataaaagaaagtgaagcaagtgtacaaaatgtaaatcctaatttt
gtaggaaaaaattttctatttacaggaacattaaagcattttacaagagaacaaataaaa
gaagagattgaaaaactaggtgggaagaatttaagttcagtaagtaaaaatttagactat
ttaatagttggagaaaaagcaggaagtaaattaaaaaaggcacaagaaattccaactata
aaaatattgactgaagaagagtttattgagttaaaagataaatttgactaa
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