Flavobacterium oreochromis: JJC03_14390
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Entry
JJC03_14390 CDS
T08111
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
foe
Flavobacterium oreochromis
Pathway
foe03030
DNA replication
foe03410
Base excision repair
foe03420
Nucleotide excision repair
foe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
foe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JJC03_14390 (ligA)
03410 Base excision repair
JJC03_14390 (ligA)
03420 Nucleotide excision repair
JJC03_14390 (ligA)
03430 Mismatch repair
JJC03_14390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
foe03032
]
JJC03_14390 (ligA)
03400 DNA repair and recombination proteins [BR:
foe03400
]
JJC03_14390 (ligA)
Enzymes [BR:
foe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JJC03_14390 (ligA)
DNA replication proteins [BR:
foe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JJC03_14390 (ligA)
DNA repair and recombination proteins [BR:
foe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JJC03_14390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JJC03_14390 (ligA)
MMR (mismatch excision repair)
DNA ligase
JJC03_14390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JJC03_14390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
RNA_ligase
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
QYS86151
LinkDB
All DBs
Position
3024611..3026608
Genome browser
AA seq
665 aa
AA seq
DB search
MDIFSKIQALRNELNQHNYNYYVLDNPTISDYEFDIKLKELQELEENHPEYNDPSSPTQR
VGGSVTKNFTTVQHEYRMYSLDNSYSKEDLLDWETRIQKLLGNRPVQYTCELKYDGASIS
ITYEDGKLLRAVTRGDGFQGDDVTHNVKTIKAVPLTLQGDFPEKFEIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPILTQFEGLEK
ARNWGFKVPTQSKLAGSMQEVFKFIEYWDTHRHEMPYETDGVVIKVNSIDQQEELGYTAK
SPRWAIAYKFKAEQVITKLNSISYQVGRTGAITPVANLEPVQLAGTVVKRASLHNADQIE
KLDIRINDEVFVEKGGEIIPKIVGVDESKRSASSTKTTYITHCPECQTELIRKEGEAQHY
CPNYYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFKNQLVSNYADLYELKKDQIVVL
DRMADKSADNLLAGIEKSKEITFERVLYALGIRYVGETVAKKLAKHYKSIENLQKSTLEE
LITVDEIGVKIAQSVIEFFENQDNLTILDRLSNYGVQLELEESASTITSDLFKGKIFVVS
GVFEKFSRDELKQLIENNGGKVGSSISSKTNYVVAGSNMGPAKLEKATQLGITILSEEEF
TTMLC
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatattttttcaaaaattcaagcccttagaaatgaattaaatcaacataattataat
tactacgttttagataatcctactatatcagattatgaatttgatataaaattaaaagaa
cttcaagagctagaagaaaatcatccagaatataatgaccctagttctcctacccaacga
gtgggaggatctgtaactaaaaactttacgactgttcaacatgaatatcgcatgtattcc
ttagataattcttactcaaaggaagacttattagattgggaaactcgaattcaaaaacta
cttggaaatagacctgttcaatatacttgtgagttgaaatacgatggtgcttctattagt
attacttatgaagatggaaaattattacgtgctgtaacgcgtggtgatggttttcaggga
gatgatgtaacgcataatgtaaaaactattaaagcagttcccttaacacttcaaggtgat
tttcctgaaaaatttgaaattagaggtgaaattattttaccatttgcagggtttgaaaaa
atgaatcaggagttaatagaaataggggaaacaccttattcaaatccacgaaatacagct
tctggaagtctaaaattacaagatagtgcagaagtagcgaaaagacccttagattgttta
ttgtactctttaatagggaataatttgcctattttaactcaatttgaaggtttagaaaaa
gcaagaaactgggggtttaaagtacctacacaatctaagctggcaggttctatgcaagaa
gtttttaaatttatagaatattgggatactcatcgtcatgaaatgccctatgaaaccgat
ggtgtagttataaaagtaaatagtatagatcagcaagaagaactaggttatactgctaaa
tctccacgttgggcaatagcttataaatttaaagcagaacaagtaataactaaattaaat
tctatttcttatcaagtaggaagaacaggagctataacccctgtagctaatttagaacct
gtacaactagcaggtactgttgtaaaaagagcttctttacataatgcagatcagatagaa
aaactagacataagaataaatgatgaagtatttgtagaaaaaggaggagaaattattcct
aaaattgtaggagtagatgaatctaaacgctctgctagctcaactaaaacaacttatata
acccattgtccagaatgtcaaacagaactgatccgaaaagaaggagaagctcaacattat
tgtcctaattattacggatgtccacctcaaatcataggaagaatacaacattatatatcc
cgaaaagcaatggatatagaaggattggggggagagacagttgcattattatttaaaaat
caattagtttctaattatgcagatttatatgaattaaagaaagatcaaatcgttgttttg
gatagaatggcagataagtcagcagataatttattagcaggaatagaaaaatcaaaagaa
ataacttttgaacgtgtcttatatgcattaggtattcgttacgtaggagaaaccgttgca
aaaaaattagcaaagcattataaatcaattgaaaatcttcaaaaatcaactttggaagaa
ctaattacggtagatgaaataggagttaagatagctcagagtgtaattgaattttttgag
aatcaagacaatttaaccattttagatcgtttgagtaattatggagtacagttagaatta
gaagagtcagcctctaccataacttctgatttatttaaagggaaaatttttgtagtatca
ggtgtttttgaaaaattttcaagagatgaattaaaacaattaatagaaaataatggcgga
aaagtaggaagtagtatttcttctaaaactaattatgtagtagcaggaagtaatatgggg
cccgctaaattagaaaaagctacacaattaggaataacaattttatcagaagaagagttt
actacaatgttatgctaa
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