Flavobacterium okayamense: KK2020170_23760
Help
Entry
KK2020170_23760 CDS
T09418
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fok
Flavobacterium okayamense
Pathway
fok03030
DNA replication
fok03410
Base excision repair
fok03420
Nucleotide excision repair
fok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KK2020170_23760 (ligA)
03410 Base excision repair
KK2020170_23760 (ligA)
03420 Nucleotide excision repair
KK2020170_23760 (ligA)
03430 Mismatch repair
KK2020170_23760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fok03032
]
KK2020170_23760 (ligA)
03400 DNA repair and recombination proteins [BR:
fok03400
]
KK2020170_23760 (ligA)
Enzymes [BR:
fok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KK2020170_23760 (ligA)
DNA replication proteins [BR:
fok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KK2020170_23760 (ligA)
DNA repair and recombination proteins [BR:
fok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KK2020170_23760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KK2020170_23760 (ligA)
MMR (mismatch excision repair)
DNA ligase
KK2020170_23760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KK2020170_23760 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
Zn_Ribbon_TF
RCDG1
Ribosomal_aS21
Motif
Other DBs
NCBI-ProteinID:
BCY29508
UniProt:
A0ABM7S962
LinkDB
All DBs
Position
complement(2581729..2583729)
Genome browser
AA seq
666 aa
AA seq
DB search
MDVLATINALREELNQHNYSYYVLDNPTISDFEFDQKLKQLQELEAKYPEFFDENSPTQR
VGGAITKNFETVQHEYRMYSLDNSYSKEDLLDWVQRCQKILGDVPLEFTCELKYDGASIS
ILYEKGMLKRAVTRGDGFQGDDVTNNIKTIKSVPIKLKGDFLEKFEIRGEIILPLAGFEK
MNQDLIEIGETPYANPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPIQNQYEGLEK
ARAWGFKVPKQSKLAKSIEEVFDFINYWDTHRHDLPYETDGVVVKVNQIQYQEELGYTAK
SPRWAIAYKFKSEQAVTTLESISYQVGRTGAITPVANLLPVQLAGTVVKRASLHNADQIE
KLDVRVGDAVFVEKGGEIIPKIVGVDVTQRSVNSQPVEYIRHCPECNTELIRNEGEAQHY
CPNFYGCPPQIIGRVQHYISRKAMDIDGLGGETVALLYNNGLIENYADLYKLEKEQIIPL
ERMAEKSAENLINGIEKSKEVPFERVLYALGIRYVGETVAKKLAKHYKNIDAIAHASLLD
LVLVDEIGEKIAQSVVQFFENQENVRIIDELKKFGVQFEIVQDENGNFSEKLKGKTFVVS
GVFETFSRDDLKKAIEDNGGKVGSSISSKTDYVVAGANMGPSKLDKASKLGIPIISEQEF
TNLLNE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatgttttagctacaataaatgctttacgtgaagaattaaaccaacataattatagc
tattatgttttagataatccaaccatttctgattttgaatttgatcaaaagctgaagcaa
cttcaagaattagaagctaagtatcctgagttttttgatgaaaattcacctacacaacgt
gttggtggagcaattactaaaaactttgaaactgttcagcatgaatacaggatgtattca
ctagataattcgtattcaaaagaagatttattagattgggttcagcgttgtcaaaagatt
ttaggtgatgttcctttagaattcacttgtgagttaaaatatgatggagcttcaataagt
attttatatgaaaaaggaatgctaaagagagctgtaactcgtggtgatggctttcaaggc
gatgatgtaaccaataatataaaaacaattaaatcggttccaattaaattaaaaggtgat
tttctagaaaagtttgaaatacgtggagaaattattctgcctttagctggatttgaaaaa
atgaaccaagatttaattgaaataggagaaacgccttatgcaaatccgagaaatacagct
tctggaagtttaaaattgcaagattcagcagaagttgcaaaacgccctttggattgtttg
ttatactcattaattggaaataatttaccaatacaaaatcaatatgaaggtttagaaaaa
gctagagcctggggattcaaagttcctaaacaatctaaattggctaaatctattgaagaa
gtttttgattttattaattattgggatacacatcgacatgatttaccttatgaaaccgat
ggagtagtggttaaggtaaaccaaattcagtatcaagaagaattaggatatacggcaaaa
tcgccacgttgggcaattgcttataaatttaaatcggaacaagcggttactacattggaa
tcaatttcttatcaagtaggaagaacaggggcaattacacctgttgctaatttattgccg
gtacaattggcaggaacagtagttaaaagagcttcattacataatgcagaccaaattgaa
aagttagatgttagagttggcgatgctgtttttgttgaaaaaggaggagaaattattccg
aaaattgttggtgtagatgttacacaaagaagtgtcaattcacaaccagttgaatatatt
agacattgccctgaatgtaacactgagttaattcgtaatgagggtgaagcgcaacattat
tgtccgaatttttatggatgtccgccgcagattattggtagagtacaacattatattagc
cgaaaagcaatggatattgatggacttggtggagaaacggttgcattattgtataataat
ggacttatagaaaattatgctgatttatataagttggaaaaagaacaaatcattccattg
gagcgaatggcagagaaatctgcagaaaatttaattaatggaattgaaaaatcgaaagaa
gtaccatttgaaagagttttatatgcgttagggattagatatgttggtgaaactgtagcc
aaaaagttagctaaacattataaaaatattgacgcaatagcacacgcatcgttattagat
ttagttttagtagatgagattggagagaaaattgcacaaagtgtagttcaattctttgaa
aatcaagaaaatgtacgtattattgatgagctcaaaaaatttggagttcagtttgaaata
gttcaagacgagaacggaaatttttcagaaaaacttaaaggtaaaacttttgtagtatct
ggtgtttttgaaacgttttctagagatgatttaaagaaagctattgaagataatggcggt
aaagttggtagctcaatttcttctaaaactgattatgttgttgcgggagcaaatatgggg
ccttctaaattagataaggcatctaaattaggtattccgattatttctgaacaagaattt
accaatttattgaatgaataa
DBGET
integrated database retrieval system
