Formosa sediminum: FNB79_17065
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Entry
FNB79_17065 CDS
T06103
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fop
Formosa sediminum
Pathway
fop03030
DNA replication
fop03410
Base excision repair
fop03420
Nucleotide excision repair
fop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNB79_17065 (ligA)
03410 Base excision repair
FNB79_17065 (ligA)
03420 Nucleotide excision repair
FNB79_17065 (ligA)
03430 Mismatch repair
FNB79_17065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fop03032
]
FNB79_17065 (ligA)
03400 DNA repair and recombination proteins [BR:
fop03400
]
FNB79_17065 (ligA)
Enzymes [BR:
fop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FNB79_17065 (ligA)
DNA replication proteins [BR:
fop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FNB79_17065 (ligA)
DNA repair and recombination proteins [BR:
fop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FNB79_17065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNB79_17065 (ligA)
MMR (mismatch excision repair)
DNA ligase
FNB79_17065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNB79_17065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
Motif
Other DBs
NCBI-ProteinID:
QDO95608
UniProt:
A0A516GVQ1
LinkDB
All DBs
Position
complement(3928019..3930019)
Genome browser
AA seq
666 aa
AA seq
DB search
MTIEAQIKQLRDELNDYNYKYYVLDQSEISDFEFDMKLKTLQDLEAKHPEFYDVNSPTNR
VGGTITKNFNTVVHDYRMYSLDNSYSKDDLLAWEQRVKKMVDGDVSYTCELKYDGASISL
TYENGVLTKAVTRGDGVQGDEVTSNIKTIKSVPLTLKGDFPEKFDIRGEIVLPFDGFNKM
NEERIEIGEEPYRNPRNTASGSLKLQDSSEVAKRPLECLLYTIVGRNLNIQSQIEGLQKA
RDWGFKVPNAAKLVHSIDDVFEFIEYWDVHRHDLPYETDGVVIKVNSFQHQEELGYTAKA
PRWAIAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIAK
LDIREGDEVFVEKGGEIIPKIIAVDLTQRPSDSKPTEYITHCPECNTALVRQDGEAQHYC
PNYNGCKPQIIGRIQHFISRKAMDIDGLGGETVALLVNEGLICNYSDLYQLTKADVLPLE
RMAEKSADNLINGIEQSKQVPFERVLYALGIRYVGETVAKKLVKHFKYVDAIAEATEEDL
VNVDEIGVKIAKSVVAFFQSEENRLIIERLKGFGLRLEISEEALANQTDTLAGKVFVVSG
VFARVSRDELKKMIEDNGGKIGSSISSKTSFVVAGDKMGPSKRTKAEALGIHVLTEDDFL
IMVNKS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgacaattgaagcacaaataaagcaattaagagacgaattaaacgattataattataaa
tattacgttttagaccaaagtgaaattagtgattttgagttcgatatgaaacttaaaaca
cttcaagaccttgaggctaaacatccagaattttatgatgtaaattcgccaacaaatcgt
gtgggtggtactataactaaaaattttaatactgtggttcatgattaccgcatgtattct
ttagataattcatactctaaagacgatttactagcttgggaacaacgcgtaaaaaaaatg
gttgatggtgatgtgtcttatacttgcgagttaaagtatgatggagcttcaattagttta
acctatgaaaatggtgtgcttacaaaagctgtgacacgtggcgatggagtacaaggcgat
gaagttacctcgaatataaaaacaattaagtcggtacctttaacattaaaaggggacttc
cctgaaaaattcgatattcgaggcgaaattgtgttaccatttgatgggtttaataaaatg
aatgaagaacggattgaaataggagaagagccttatagaaatccaagaaataccgcttca
ggaagtttaaaattacaagacagtagtgaagtagcaaaacgcccattagaatgtttgttg
tatactattgtgggtagaaatctaaatattcagtcgcaaatagaaggcttgcaaaaagca
cgagattgggggtttaaagtgcccaatgccgcaaaattagtacattctatagatgatgtt
tttgaatttatagaatattgggatgtacataggcacgatttgccttacgaaaccgatggg
gttgttataaaagtgaatagttttcagcatcaggaagaattagggtatactgccaaagcg
ccacgctgggctatcgcttataagtttaaggccgagcaagtgtctacccgtttaaatgaa
attacgtatcaggtaggccgaacaggtgcaattacgcctgttgcaaatttagaacctgta
gaattagcaggtaccaccgtaaaacgtgcctctttgcataatgccgaccagattgcaaaa
ttagatatccgtgaaggcgatgaggtgtttgttgaaaaaggaggagagattattcctaaa
attattgcagtcgatttaacacaacgtccttctgattccaaacctacggaatatattaca
cattgtccagaatgcaatacagcattagtaagacaagacggagaagcccaacattattgt
ccgaattataacggctgtaaacctcaaataatagggagaatacagcactttatttctaga
aaagccatggatatagatggtttaggaggagaaacagtagcattattagtaaacgaaggc
ttaatttgtaattattcagatttataccaactcacgaaggctgatgttctgcctttagaa
cgtatggcagaaaagagtgcagataatttaattaacggaatcgagcaatctaaacaagtg
ccttttgaacgcgttttgtatgcgttgggaattcgttatgtaggagaaacagttgctaaa
aaactagttaagcattttaaatatgttgatgcaatagcagaagcgaccgaagaggattta
gtaaatgtagatgagataggggtaaagattgctaaaagtgtagttgctttttttcaatcc
gaagaaaatcgtttaataattgagaggttaaaagggtttgggttacgtttagaaatttct
gaagaagccttagctaatcagaccgatactctggcaggaaaggtatttgtggtctcaggt
gtttttgcaagggtgtctagagatgagctaaaaaaaatgatagaagataacggtgggaaa
ataggaagttcaatttcttcaaaaactagttttgtggttgcaggtgataaaatgggtcca
agtaaacgtactaaagcagaggcattaggtattcatgttttaacagaagacgatttttta
atcatggtaaataaatcttaa
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