Flavobacterium pallidum: HYN49_14260
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Entry
HYN49_14260 CDS
T06077
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpal
Flavobacterium pallidum
Pathway
fpal03030
DNA replication
fpal03410
Base excision repair
fpal03420
Nucleotide excision repair
fpal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYN49_14260
03410 Base excision repair
HYN49_14260
03420 Nucleotide excision repair
HYN49_14260
03430 Mismatch repair
HYN49_14260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpal03032
]
HYN49_14260
03400 DNA repair and recombination proteins [BR:
fpal03400
]
HYN49_14260
Enzymes [BR:
fpal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYN49_14260
DNA replication proteins [BR:
fpal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYN49_14260
DNA repair and recombination proteins [BR:
fpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYN49_14260
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN49_14260
MMR (mismatch excision repair)
DNA ligase
HYN49_14260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYN49_14260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
Zn_Ribbon_TF
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
AWI26973
UniProt:
A0A2S1SKN6
LinkDB
All DBs
Position
complement(3354249..3356246)
Genome browser
AA seq
665 aa
AA seq
DB search
MEIRQKIQALREEINGHNYNYYVLDAPVISDFLFDTLLKELQELENAHPEFFDENSPTQR
VGGMVTKNFNTLVHEQRMYSLDNSYSKEDVADWEKRILKVLGEVNPEFTCELKYDGASIN
LTYENGKLNKAVTRGDGFQGDDVTVNIRTIRSIPLYLKGDHPEKFDIRGEIILPLAGFEK
MNQELIEIGEPPYANPRNTASGSLKLQDSSEVAKRPLDCLLYSIVGNKLPFTTHFEGLQH
ARDWGFKVPKEAQLTKNIKEVFEFIDYWDIHRHHLPYETDGVVIKVNSLHYQEELGYTAK
SPRWAIAYKFKSEQVSTKLNSISYQVGRTGAITPVANLEPVQLAGTVVKRASLHNADQIE
KLDIRIGDTVYVEKGGEIIPKIIAVDLSQRNTDSEPTKYITHCPECHTELIRNAGEAQHY
CPNFYGCPPQIIGRIQHFISRKAMDIEGLGGETVALLYNHGLAHNYADLYELKVEDVLPL
ERMAQKSAENLIKGIEKSKEIPFERVLFALGIRYVGETVAKKLAKHYKNINALADASLTD
LILVDEIGERIAQSVLEFFENEENRIIIQRLQSYNVQLKTIERINPDATDKLQGKTFVVS
GVFETFSRDELKKAIEDNGGKVGSSISAKTDFVVAGENMGPAKLEKATKLNVPVISETDF
INMLQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaggcaaaagattcaggcgcttcgcgaagaaattaatgggcataactacaat
tactatgttctcgatgcccctgtgatttctgatttcttgtttgatacgctgctgaaggag
ttgcaggaactggaaaacgcccatcctgaattttttgatgaaaattcccctacacagcgt
gtcggtggtatggtgacgaaaaatttcaatacccttgtccatgagcaaaggatgtattcc
ctcgataattcctattccaaagaagacgtggccgactgggaaaaacgtatattgaaggtg
ttgggtgaagtaaatcccgaatttacctgcgaactgaaatatgacggggcctcgatcaac
ctgacatatgaaaatgggaaattaaataaagccgttacccggggtgatggttttcaggga
gacgacgtgacggtgaacattcggacaatcagatcgattccattataccttaaaggcgat
catcctgaaaaatttgatatccgcggcgaaatcatcctgcctttagccggttttgagaag
atgaaccaggagcttattgaaataggtgagccaccttacgccaatccgagaaacaccgcg
tcgggaagcctgaaattgcaggacagttcagaagtggcaaagcgtccgttggattgcctg
ttgtattccattgtcggcaacaagctgccttttacaacgcattttgaaggcttacagcat
gcacgtgactgggggttcaaagtccctaaagaagcacaattaacgaaaaatatcaaggaa
gtttttgaatttatagattattgggacatccaccgccaccatcttccgtatgaaacggac
ggcgtggtgatcaaggtgaattcgctgcattatcaggaggaattagggtatacggcgaaa
tcaccgcgatgggccattgcctacaaattcaaatcagaacaggtttccacaaaacttaat
tcgatttcttaccaggtaggaaggaccggtgccattactcctgtggcaaatctggaaccc
gtgcaattggccggaaccgttgtaaaacgcgcctcgctccataatgcggaccagattgaa
aaactcgatatccgcattggtgatactgtttatgtagaaaaaggcggcgaaatcatccct
aaaatcattgctgtagacttatcgcaaaggaacacagattctgaacctacaaaatacatc
acacattgccctgaatgccacaccgaattgattcggaatgccggagaagcacaacactac
tgtccgaatttttatggttgcccgccgcagattatcgggcgtatccagcactttatttca
agaaaagcgatggatattgaaggtttgggaggggaaaccgtggccttgctttataatcat
gggctggcccataactatgcggatttgtatgaactgaaagtggaagatgtccttccgctg
gagcgtatggcgcaaaaatcagccgagaacctgatcaaaggcatagaaaaatcaaaggaa
attccgtttgaaagggtgttgttcgctttgggcatccgttatgtgggggaaactgtagct
aaaaaactggcaaaacattataaaaatatcaatgcattggccgatgcaagcctgacagat
ttgattttggtcgatgagattggggaaaggattgcacaaagcgttttggaattctttgaa
aatgaggaaaacaggataattatccaaagactgcaaagttataatgtacagctcaaaacc
atcgaacgcattaatcctgacgcgactgacaagctccaagggaaaacattcgtggtgtca
ggtgtctttgaaaccttttcccgcgatgaactcaagaaagccattgaagacaacggaggt
aaagtaggaagttccatttctgcaaaaaccgattttgttgtagctggagagaatatggga
ccggcaaaactggaaaaagccacaaaactgaatgttccggtaatttcagaaaccgatttt
atcaacatgcttcaatga
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