Fontisphaera persica: NXS98_14970
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Entry
NXS98_14970 CDS
T09048
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpes
Fontisphaera persica
Pathway
fpes03030
DNA replication
fpes03410
Base excision repair
fpes03420
Nucleotide excision repair
fpes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NXS98_14970 (ligA)
03410 Base excision repair
NXS98_14970 (ligA)
03420 Nucleotide excision repair
NXS98_14970 (ligA)
03430 Mismatch repair
NXS98_14970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpes03032
]
NXS98_14970 (ligA)
03400 DNA repair and recombination proteins [BR:
fpes03400
]
NXS98_14970 (ligA)
Enzymes [BR:
fpes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NXS98_14970 (ligA)
DNA replication proteins [BR:
fpes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NXS98_14970 (ligA)
DNA repair and recombination proteins [BR:
fpes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NXS98_14970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NXS98_14970 (ligA)
MMR (mismatch excision repair)
DNA ligase
NXS98_14970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NXS98_14970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Mustang
zf-ribbon_3
GFA
Motif
Other DBs
NCBI-ProteinID:
WCJ59003
LinkDB
All DBs
Position
complement(4001949..4004036)
Genome browser
AA seq
695 aa
AA seq
DB search
MDWQTAQQRHAQLCAEIRRHDYLYYVVGRPEISDFEYDRLYRELVELEQQFPALITPDSP
TQRVGGQPVDSFPPYRHAAPMLSLDNTYSQGEVREFVQRVQRLLPGEALAWVVEPKVDGL
AVSLRYEQGVLAVGATRGDGTTGDNITSNLKTIRSVPLRLQTPPAPPAPPQGDLFAPPPA
SPLPAVLEVRGEVFMPRAGFEQLNAERRAAGEEEFANPRNAAAGSLKQLDPRIVARRPLE
MVFYGVGQVEGVPVPPTHDALLHWLQRLGFKTPERIWLCHSTEELLAALDELDRFRKTLP
YDTDGAVIKLNSLAQRERCGATAKAPRWAIAYKYAPEQAETRLKAITIQVGRTGALTPVA
ELEPVFLSGSTISRATLHNEEEIRRKDIRVGDWVVIEKAGEVIPAVVRAVAEKRTGAEQV
FVFPKNCPECGTPVTRGAEAGVDYVVWRCPNPDCPAQIRGRIEHWCSRGAMDIEGGGEVL
VAQLVKTGLVQDVADLYRLTVDELCQLERMGEKSARNFLEGIEASKQRDLWRVLFGLGIL
HVGASVAKSLSRTFPTLDDILNASMEQLQKAEDVGETIAQSILQWAGDPRNRRLVERLRA
AGVNFQSSLYQAGPAGGRLAGKTLVLTGTLPHLTREQATAKIEAAGGRVASSVSKKTDYV
VAGAEAGSKLEKARQLGVPVIDEAELLRLCGETSP
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggactggcaaaccgcccagcaacggcatgcgcagctttgcgcggaaatccggcgtcac
gattacctttactacgtggtgggccggccggaaatctccgattttgaatatgaccgcctc
taccgcgagctggtcgagctggagcagcaatttcccgctctcatcacccccgactccccc
acccagcgcgtgggcggccagcccgtggattcctttccgccgtatcgtcacgcggcgccg
atgctcagcctggacaacacctactcgcagggcgaggtgcgggagtttgtgcagcgcgtg
caacgtctgctgccgggcgaagcgctggcgtgggtggtggagccgaaagtggacggcctg
gccgtgagcctgcgctacgagcagggcgtcctcgccgtgggcgccacccgcggcgatggc
accacgggcgacaacatcacctccaatctcaaaaccattcgcagcgtgcccctccgcctg
caaaccccgcccgccccgcccgcgccaccccagggagatttattcgccccgccccccgcc
agcccactgccggcggtgttggaagtccgcggcgaagtgttcatgccccgcgccggtttc
gagcaactgaatgccgaacgccgcgccgccggcgaggaggaattcgccaacccgcgcaac
gccgccgccggttcactcaagcaactggacccccgcattgtggcccggcgccccctggaa
atggtgttttacggcgtgggccaggtggaaggcgtgccggtgccgcccacccatgatgcc
ttgttgcactggctccagcgcctcggcttcaaaacccccgagcgtatctggctctgccac
tccaccgaagaacttctcgccgcgctcgacgagctggaccgctttcgcaaaaccctgccc
tatgacaccgacggcgcggtgattaaactcaactcgctggcccagcgcgagcgttgcggc
gccaccgccaaggccccccgctgggccattgcctacaagtacgcgccggagcaggccgaa
acccgtctcaaggccatcaccattcaagtcggccgcaccggtgccctcaccccggtggcc
gagctggagccggtgtttctttcgggcagcaccatcagccgcgccacgctgcacaatgag
gaggaaatccgccgcaaagacattcgcgtgggcgattgggtcgtcatcgaaaaagccggt
gaggtcatcccggccgtggtgcgcgccgtggcggaaaaacgcaccggcgccgagcaggtg
tttgtgtttcccaaaaactgccccgagtgcggcaccccggtcacccgcggcgccgaggcc
ggcgtggattatgtcgtctggcgctgccccaaccccgattgccccgcccaaatccgcggg
cgcatcgagcactggtgcagccggggcgccatggacattgaaggcggcggcgaggtgctg
gtggcgcaactggtcaaaaccgggctggtgcaggacgtggccgacctctaccgcctcacc
gtggacgagctgtgccaactcgagcgcatgggtgaaaaatccgcccgcaattttctcgag
ggcatcgaggccagcaagcaacgcgacctgtggcgggtgctttttgggctgggcatcctg
cacgtgggcgccagcgtggccaaatctttgagccgcacttttcccacgctggacgacatc
ctgaacgccagcatggagcagttgcaaaaggcggaagatgtgggcgagaccatcgcccaa
agcattctccagtgggccggcgacccccgcaaccggcggctggtggagcgcctgcgggcg
gcgggcgtcaatttccagagcagcctgtatcaggccggccccgccggcggacggctggcg
ggcaaaaccctcgtgctcaccggcacgctgccccatctgacccgcgagcaggccacagcc
aaaattgaagccgccggcggacgcgtggcctccagcgtcagtaaaaaaaccgattacgtg
gtggccggggctgaggccggctccaagctcgaaaaagcccgccagctcggcgtgccggtg
attgacgaggcggagttgttgcgcttgtgcggcgaaacatcgccctga
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