Falco peregrinus (peregrine falcon): 101922712
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Entry
101922712 CDS
T02856
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain containing 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
fpg
Falco peregrinus (peregrine falcon)
Brite
KEGG Orthology (KO) [BR:
fpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fpg03036
]
101922712 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
fpg03400
]
101922712 (SMCHD1)
Chromosome and associated proteins [BR:
fpg03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101922712 (SMCHD1)
DNA repair and recombination proteins [BR:
fpg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101922712 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
101922712
NCBI-ProteinID:
XP_005236564
LinkDB
All DBs
Position
Un
AA seq
1983 aa
AA seq
DB search
MHYFIVTSCCLKAFGIATDENFVITTTNRKEITEHTFSQLVQDGVTLYLLQSVDQMLLLA
TKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELVDNSLSATSQNTGVRSIQIKLL
FDDSQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPMPLPRSLNS
DISYFGVGGKQAVFFVGQSARMISKPAESQDVHELVLSKEDFEKKEKNKEAIYSGYIRNR
KPSDSTHITSDDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIY
HYYIHGPKGNETNAVTKDISPFNNIDIQISMFEKGKIPKIVNLREIKDDMQTLYINTAAD
SFEFKAHAEGEAIVEGIIRYHPFLYDKETYPDDPCFPSKLSDDDEEDCFIVEKGARGKRP
IFDCFWNGRLIPYTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMD
LELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPS
KRMQSPWTVYAAIEWDGKTYKTGQLVKTIKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQ
IALEPQALYAEMKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETR
FAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEVISHISQHG
GKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFSVG
LLELPFRVGVPFNIPLELQDEFGHATQLTTDIKPILEASGLTLQYEEVTTGAKCIIKGVT
AKGCVNSCQGKNFNLKVTLPGLKEDTQIFKIRLQPGPPCQLKVKPDSEILKIENGTAFPF
QVEVLDESGNITAQPKLIVHCKFSGASDLPVYSVDCSNAGTNILTGTVIHVQNIKKDQIL
KASIEIPSCKDVPPVEKIIKLLPSSRVARLQVLSMDGQKAIQIKHQDEISWVAGDIMRNL
IFQMYDEGEREIHITPAVAEKIKVNWTPRINREQLIQGLLPDVKVPTSVKDVRYCLITYL
DVHVSLESAFTVRPRPDEPKHIKCKLKGPNTLQVGEELQSEIDVMITDQYGNQVQTVTSA
CVNSLGVSGPGLDKSNLKISWQESTLTMRVKGIRFKPCVLGSKELCFAWREFSDFLRVNL
TAGPPAKLQLVDWPELEKPVAVINGRELQKPIIVQLCDQWGNPSPEPNVKISLTKSNNLK
IIPSNLQQKTDENGRANLGVISIHARRGEHFLQLKASYNKTMLDYPIIKLNVLPDPEKPV
HLNVKYDKDACFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWETQTSGTKIPMDVT
TFSCSKVKDDKEDGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLNSDQIVVEVVPNDPVR
LLPDSLPATPAVSNVRTLASRTLVKDLYLHVMDEYNNHTGIDLVGRIIAKIKSPNEDDIE
IPQFQGKVSTIEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYCLSF
MFYNDFKKQQQMATLTRERDQLSQSIGVYRNWFDITNQLVTEMKCQVKEAETRETHLKNE
LKKHQIELPQTNTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNYPKGNQDILGKIAHLAQ
IEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPL
PHLRNGKIFFRPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVV
KITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTLSGQIDLLQQ
YRAAVVKLDSVNKDLDLHLQSLNTPEMLKKKQELAEQEKSLKLIEQKLGMTPSDKVTESL
LQPIMLDMSDTPIPPKRMRRDSVKKLYSSEEWISSPQKKQQLQQQPLPVAPSELNGTSRK
RKA
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atgcactacttcatcgtaacttcttgctgccttaaagcatttggcatagctactgatgaa
aactttgttatcaccacaacaaacaggaaggagattacagaacacaccttcagccaactt
gttcaagatggagttactttgtatctgctacagtcagttgaccaaatgctgcttttggca
accaaggagcgaattgacttcctgccccactatgatacacttgttaaaagcggcatgtat
gagtactatgccagtgaagggcaaaatcctttgccatttgcccttgctgagttggttgac
aattctctgtcagccacgtcccaaaatactggtgttcggagcatacagataaaattgtta
tttgatgactcccaaggaaaaccagctgttgctgtgattgataatggaagaggaatgact
tctaaacagcttaacaactgggctgtatatagattgtcaaagtttacaagacaaggtgac
ttcgagagtgatcattcaggatatgtacggcctatgccactgcctcgtagtctaaacagt
gatatctcatattttggagttggaggcaaacaagcggtgttcttcgttggacagtctgcc
agaatgataagcaaacctgcagaatctcaggatgttcatgaacttgtcctttctaaagag
gattttgaaaagaaggagaaaaacaaagaagcaatatatagcggatacattcgaaacaga
aagccatctgactctactcacatcacaagtgatgatgaaagatttcttcataatctaata
ttagaagaaagggataaagagagtttcacagcagttgtcattacaggtgtacaaccagac
cacatgcagtacttgaaaaactactttcatctttggacaaggcagctggcacatatctat
cactattatattcatggaccaaaaggaaatgaaactaatgctgtaacaaaagacataagc
cccttcaacaacatcgacattcagatttcaatgttcgaaaaaggaaaaataccaaagatt
gtaaatcttagggagatcaaagatgacatgcagacgttgtatataaatactgcagcagat
agttttgagtttaaggcacatgctgaaggagaagctatagtggagggcatcatcagatat
catcccttcctgtatgataaagaaacataccctgatgatccatgttttccatcaaaatta
agtgatgatgatgaagaagactgctttatagtagaaaagggtgccagaggaaaaagacct
atttttgattgtttttggaatggaagattaataccatacacaactgtggaagattttgac
tggtgtgctcctccaaagaagagaggattggcaccaattgaatgctacaacagaatttct
ggtgcattatttaccaatgataagtttcaggtcagcacgaacaaactcactttcatggat
ctggagctgaagctgaaagataagaatactttgttcacaagaatcttcaatggacaggag
cagcgaatgaaaattgacagagagtttgctttgtggctcaaagactgtcatgaaaaatat
gacaaacagataaagttcacagtctttaaaggaataactacacgtactgatttgccatcc
aaaagaatgcagagcccttggacagtgtatgctgcgatagagtgggatgggaaaacatac
aaaactggacagctggtgaaaactattaagacccttccaatattttatggaagtattgag
aaattttttttgtatggagaccatgatggggatatatttgccactggaggagaggttcaa
attgctttggaacctcaggcattgtatgctgaaatgaaaactattccaatctcaaaactt
gacagaacagtgtctgataaagctgttaaaaaatacatagaggatgaaatggcaaggctt
cctgacaaattatcagtaacatggcctgaaggagatgagttattaccaaatgaaacaaga
tttgctggtactccaataggagcgttaagaatagaaattttgaataaaaaaggagaagca
atgcaaaaactaccaggtacaagccacggaggttcaaagaaacttcttgttgaactcaag
gttattttacattcacctactgggaataaagaagtaatttcccatatcagtcagcatgga
ggcaaatggccatactggtttaagaaaatggaaaatcttcagaagcttgggaactatacc
ttgaaactgcaagtagtattgaatgaaagtaatgcagacacttacgcaggaaggcctcta
ccatctaaagtatttaaatttactatcgtagagggcaaaccagagaaattttcagtgggt
cttttggagcttccttttcgagttggagtaccttttaatattcctttggaactgcaggat
gaatttggtcatgcaacacagttgacaactgatattaaaccaattcttgaagctagtgga
ttgacattgcagtatgaagaagtaactacaggagcaaagtgcatcattaaaggtgttact
gctaaaggctgtgtaaatagttgccagggcaagaactttaacctgaaggttactcttcct
ggtttgaaagaagacacacaaatctttaaaataagattgcagcctggtcctccttgtcaa
ttgaaagtaaaaccagattctgagattctaaagattgaaaatggtacagccttccccttt
caggttgaagtactggatgaatcagggaatataacagcacagcccaagctgatagttcat
tgtaagttttcaggtgcttcagaccttcctgtgtattctgtggactgcagtaatgcagga
acaaacattttaactggtacagttatacatgtacagaatatcaagaaagaccagatactg
aaagcaagtattgaaatacctagttgtaaagatgtgccaccagtggaaaagattattaaa
cttcttcctagcagtcgtgttgcaagactgcaggtcttaagtatggacggacaaaaagct
attcaaattaaacatcaggatgaaattagttgggttgctggtgatatcatgcgcaacctt
atatttcagatgtatgatgaaggagaaagggagatacatataactccagctgtggcagaa
aaaatcaaggttaactggacacctagaattaacagagaacagttgattcagggattatta
cctgatgtgaaagtaccaacatcggtaaaagatgtacgttactgtctaattacttatctt
gatgtccacgtgtctttggagagtgcatttacagtcagaccacgtcctgatgaacccaag
cacatcaaatgtaaattgaaaggaccaaacacactgcaggtgggtgaagaactacaaagt
gaaatcgatgtaatgattacagatcagtatggaaatcaggttcagacagtgacgtctgca
tgtgtaaattcccttggagtttctgggcctggacttgataaatcaaatttgaaaatatct
tggcaggaaagtactctgacaatgagagtaaaaggtattcggtttaaaccttgtgtactt
ggaagcaaagaattgtgcttcgcttggcgagaattttctgactttcttagagtaaattta
actgcaggaccccctgctaaattgcagcttgtggattggccagagttagaaaagcctgtt
gcagtgattaatggtagagaattgcagaagcccattattgttcagctatgtgatcagtgg
ggaaatccatctcctgaacctaatgtcaaaatcagcctcacaaagagtaacaacttaaag
attattccttcaaacctgcaacaaaaaacagatgaaaatggtagggctaacctgggagtt
attagtattcatgcacgtaggggagagcactttttacagcttaaagcctcatacaacaag
accatgttagattatcctataatcaaattaaacgtcctgcctgatcctgagaaacctgtc
cacttgaatgttaaatatgacaaagatgcttgttttccagcaggaggtacctttcctgat
tttatggttagtgttctttctgaagatgacaacattattaaaaatattaatccagcacgg
atttctatgaaaatgtgggaaacacagaccagtggaactaagataccaatggatgttaca
acatttagctgtagtaaagtgaaggatgacaaggaagatggcttcttctacttcagggat
aaagtggttccagagagagtgggcacttacagtatccagtttacctttgcaatggataag
acaaatatgctcaacagtgaccagattgttgttgaagttgtacctaatgaccctgtacgc
ttgttacctgattctttaccagctactccagcagtttccaatgttcgaactcttgctagc
cgtacactggtcaaggatttatacctccatgtaatggatgagtacaacaaccacactgga
attgatctagttggccgaataatagcaaaaattaagagccccaatgaagatgatatcgag
atcccacagtttcaggggaaagtcagtacaattgagtttccatttgacagaggctcagct
gaaattaatctagtgttggctgaaaacagtcctggaagagatagcactgaatatattctt
gtatttgagccagatctgccagctttgaagaaacctttggaaccatactgtctgtccttt
atgttttacaatgatttcaagaagcagcaacagatggcaacgcttacaagggagagagac
cagttatctcagtccataggtgtttatagaaattggtttgatattaccaatcagcttgta
actgaaatgaagtgtcaggttaaagaagctgaaacaagagaaactcacctgaagaatgaa
ctgaaaaaacatcaaattgaattaccacagacaaacacgcttcagtatgtggattctctt
ataaaacaaaagatgttggatcaagaaggagtaatgaaacagccaaggcgaacttgtacc
ctcccaaactatccaaaaggcaaccaggatattttaggcaagattgcacatttagctcaa
attgaggataacgaagcagcaaaagttatctcttggcatttggcaagcgacatggactgt
gtagtcacattgactactgaagctgctcgttctatttttgatgaaactcaaggtcgacaa
caagtgttacctcttgattctatttacaagaagacacttcccgattggaacagaccttta
cctcacttaagaaatggaaaaatcttcttcagacctattggaaatccagtatttgccaga
gatctgttaacatttccagataatgtagagcattgtcaaacagtgtttgggatgctcttg
ggtgacactatcattatagataacttggatgctgccaaccattacagaaaagaggttgta
aaaattacacattgccctactctgctgactagagagggagacaggattcgcagcaatgga
aaatttggaggccttcagaataaagctcctccaatggacaaactcagaggcatggtattt
ggagcacccatgccgaaactttactctactctctctggacagatagatcttcttcagcaa
taccgtgcagcagtggtgaaacttgatagtgtgaataaggaccttgatttacatttgcag
tcacttaacactccagaaatgctaaagaaaaaacaggaacttgccgaacaagagaaaagc
ctcaagctaatagaacaaaaattgggtatgactccatcagataaagtcactgaatcattg
cttcagcctataatgttagatatgtctgacacccccatccctcccaaaagaatgcgaaga
gactcagtaaaaaagttgtatagctcagaagaatggatctcctctccccaaaagaagcag
cagctgcaacagcaaccgctgccagtagccccttcagaacttaatggaacttcacgaaag
agaaaggcatag
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