Fluviibacter phosphoraccumulans: SHINM1_011400
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Entry
SHINM1_011400 CDS
T07031
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03030
DNA replication
fpho03410
Base excision repair
fpho03420
Nucleotide excision repair
fpho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM1_011400 (ligA)
03410 Base excision repair
SHINM1_011400 (ligA)
03420 Nucleotide excision repair
SHINM1_011400 (ligA)
03430 Mismatch repair
SHINM1_011400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpho03032
]
SHINM1_011400 (ligA)
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_011400 (ligA)
Enzymes [BR:
fpho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SHINM1_011400 (ligA)
DNA replication proteins [BR:
fpho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHINM1_011400 (ligA)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SHINM1_011400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHINM1_011400 (ligA)
MMR (mismatch excision repair)
DNA ligase
SHINM1_011400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHINM1_011400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BCA65538
LinkDB
All DBs
Position
complement(1164247..1166337)
Genome browser
AA seq
696 aa
AA seq
DB search
MQDAFDFSAPEVSGETSAMLKVSERAAQLRALLDRYAYAYYVCDAPEVPDAEYDQLFREL
ESLETAHPTLVCPESPTQRVGAPPLAAFDTVTHQTPMLSINNAFTAEEVTAFDRRCRELL
ALSENSPPIAYACEPKFDGLAISLVYEDGLFQLGATRGDGATGENVTLNVRTIHSVPLRL
NSPDPKGRLEVRGEVLIRRADFAKLNAAQEAAGEKTFANPRNAAAGSLRQLDSAITARRP
LSFFAYGIGETSDQAMVPDTQAGVLDWLAMLGFRVAASRAVVHGAAGLLGYYDTMGRQRP
TLPYDIDGVVYKVNRRDQQAQLGFVSRAPRFVIAHKFPAEEVLSRVEAIDVQIGRTGAVT
PVARLEPVFVGGVTVTNATLHNFIELARKDIRVGDTVVVRRAGDVIPEVVASLPDRRPVD
EAGHARFPLMACPPLCPECGSHIERLPGEAVARCTGGLVCPAQRKQALRHFASRRAMDIE
GLGEKIVDQLVDAGLVHSPADLYTLTVAQLTALDRFADKSAENLVAAIQNSRQARLDRLI
YALGIRNVGEQTAKDLARYMGSMDALMQADQTVLMQVPDVGPVVADSIVSFFAEAHNREV
LARLQAAGMHWEDLPTQVAEGPLLGKTVVLTGTLPNLSRDEAKALIEAAGGKASGSVSAK
TYWVVAGEAAGSKLDKARSLGIEILDESEFLKRLQS
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggacgcttttgatttcagtgcccccgaagtctccggggaaacctcggcaatgctg
aaggtgtctgagcgcgccgctcaattacgcgcattgcttgaccgctacgcgtacgcttat
tacgtatgtgatgcgccagaagtgccggatgccgaatatgaccagctatttcgtgaactg
gagtcgctggagaccgcccatccaacgttagtctgtcctgaatcaccgacgcagcgcgtg
ggggcgccgcccttggcagcgtttgatacggtgacgcatcagacgcccatgctctcgatc
aataacgcctttacggcggaagaagtgacggcctttgatcggcgctgtcgcgaattgttg
gcgctttctgaaaacagcccacccattgcttatgcctgtgaacccaagttcgacggcctg
gcgatatcgctggtctatgaagatgggctatttcagctgggtgcgacgcgcggggatggg
gccacgggagaaaatgtcacgctgaacgtgcgcacgattcacagtgtgcccttgcgtctg
aattcaccagaccccaagggacgcttggaggtgcgcggtgaagtgctgattcgccgtgct
gattttgccaagcttaatgcggcccaagaagccgcaggcgagaaaaccttcgccaacccg
cgcaatgcggcagcgggcagtttacggcagcttgattcggcaatcactgcccggcgaccg
ctcagtttttttgcttatggtatcggtgagaccagtgatcaagccatggtgcctgatacc
caagccggggtactcgattggttggccatgctgggttttcgcgtggcagcgtcgcgggct
gtggtgcatggggcggcaggtttgctgggctattacgacaccatgggcaggcaacgaccg
accttgccctacgacatagacggggtggtttacaaagtgaaccgccgagatcagcaggcg
caattgggctttgtctcccgtgcaccacgctttgtgattgcacataagtttccagccgaa
gaggtgttgtcacgggtcgaggcgattgacgtgcaaattggccgtacgggggcggtaacg
ccagttgcccgtctggaaccggtgtttgtcggcggggtgacggtcacgaacgccacactg
cataattttatcgagttggcccgtaaggacatccgtgttggcgatacggttgtggtgcga
cgggcaggggatgtgattccggaagtggttgcttcattgccggatcgtcgacccgttgac
gaggcagggcacgcgcgctttccgttaatggcctgcccgcctctgtgcccggagtgtggt
tctcatattgaacgcctacccggtgaagcggttgcccgctgtaccggtggcttggtttgc
ccggcccagcgcaaacaagccttgcgccattttgcctcgaggcgcgccatggatattgaa
ggactgggcgaaaaaattgtagatcaactggtcgacgcagggctcgtgcattcgcccgcc
gatctttacaccttgacggtggcacaattgaccgcgctggatcggtttgccgataaatcc
gccgagaatctggtcgcagcgattcaaaatagccgccaggcaagattggatcgactgatt
tatgcgctgggtattcgcaatgtgggcgagcaaacggccaaagatctggcccgctacatg
ggctcgatggatgcgctgatgcaggccgatcagacggtcctgatgcaagtaccggatgtg
gggcctgtggtcgctgattcgatcgtctcgttttttgccgaggcgcataaccgcgaggtt
ttagcccgcctgcaagcggccggtatgcattgggaagatctgccgacgcaggttgcagaa
gggccgctactgggtaagacggtggtattgaccggcacgttgcctaacttgagccgtgat
gaagccaaggcattgattgaagcagcgggtggtaaggcctcgggttctgtttctgccaag
acgtattgggtggttgcgggagaggcagcaggttcgaaactggacaaagcgcgcagtctg
gggatcgagatccttgatgagtctgaatttctgaaacgtttacaatcataa
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