Fictibacillus phosphorivorans: ABE65_001460
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Entry
ABE65_001460 CDS
T04282
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpn
Fictibacillus phosphorivorans
Pathway
fpn03030
DNA replication
fpn03410
Base excision repair
fpn03420
Nucleotide excision repair
fpn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABE65_001460 (ligA)
03410 Base excision repair
ABE65_001460 (ligA)
03420 Nucleotide excision repair
ABE65_001460 (ligA)
03430 Mismatch repair
ABE65_001460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpn03032
]
ABE65_001460 (ligA)
03400 DNA repair and recombination proteins [BR:
fpn03400
]
ABE65_001460 (ligA)
Enzymes [BR:
fpn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABE65_001460 (ligA)
DNA replication proteins [BR:
fpn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABE65_001460 (ligA)
DNA repair and recombination proteins [BR:
fpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABE65_001460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABE65_001460 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABE65_001460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABE65_001460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ANC75583
UniProt:
A0A160II09
LinkDB
All DBs
Position
259265..261271
Genome browser
AA seq
668 aa
AA seq
DB search
MNEEQAKERILELREMLEKYNYEYHVLDKPSVPDAEYDQLMKELIELENNHPKLHDEHSP
TSRVGGAVLDFFEKVEHTVPMLSLGNAFNDQDLRDFDRRVRDGVGSNVSYVAELKIDGLA
VSLTYQDGRFVRGATRGDGTIGEDITNNLKTIRSIPFKLKEDVMLEVRGEAFMPKRSFQK
LNAHREEEGQELFANPRNAAAGSLRQLDPKIAASRNLDIFLYGVGKLEGHSVDFHDESLT
YLSHLGFKTNPEWKKCANIEEVIEYVNSWQEKRPDLPYEIDGIVIKVNSLYQQEELGFTA
KNPRWAIAYKFPAEEVVTKLEGIELNVGRTGVVTPTALLQPVLVAGTTVKRASLHNEDLI
REKDIKLGDYVVVKKAGDIIPEVVNVITERRTGDEIDFNMPTECPECDSKLERLDGEVAL
RCLNPQCPAQIREGFIHFVSRNAMNIDGLGEKVVAQLFKEKLIQNFADLFKLEREKLLEL
ERMGEKSVDNLLAAIEKSKENSLERLLFGLGIRHVGAKAAKTIAQRFENMDGLMSASKEE
LLAVEEIGEKMADSILLYFSKPEVHELVAELKTLGMNMEYKGPKLVKVEDLDTPFAGKTV
VLTGKLSILTRNDAKEQLERLGAKVTGSVSKNTDMLIAGEDAGSKLDKAKTLGIEIWDEQ
KLVDELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgaagaacaagcgaaggaacgcatcctggaactccgggaaatgctagaaaaatat
aattacgaatatcacgtactagacaagccgtctgtacctgatgctgaatatgatcagctc
atgaaagagctgatcgagcttgagaacaatcatccaaaacttcatgacgagcattcgcct
acatcacgtgtaggcggtgctgttttggacttttttgaaaaagtagaacatactgtaccg
atgctgagtctaggtaatgctttcaacgatcaagatctgcgagattttgaccgccgtgtg
agagatggcgtaggttcgaacgtatcgtatgttgctgaacttaagatcgatggtctagct
gtatcccttacgtatcaagatggtcgttttgttcgtggggctacacgtggtgacggcaca
atcggtgaggatataacgaataatttaaaaacgatccgttctattccatttaagttaaaa
gaagatgtcatgcttgaagtacgaggcgaggcgttcatgccaaaaagatccttccaaaag
ctcaatgcacatagagaagaagaaggacaagagctttttgcgaatccacggaacgcagca
gctggatctttacgtcagcttgatccgaagatcgccgcgagccgtaacctcgatattttt
ctttatggtgtaggaaagcttgaaggtcattcggtcgatttccacgacgaaagtctaacg
tacttaagccacttaggtttcaaaacgaacccagagtggaagaagtgcgcgaacattgaa
gaagtgattgaatatgtgaacagctggcaggaaaagcgtccagaccttccatatgagatc
gacggaatcgttatcaaggtgaactctctttatcagcaagaggaactaggattcacggcg
aagaacccgcgttgggcgatcgcgtacaagtttcctgctgaagaggttgttacaaagctt
gaaggcatcgagttgaacgttggacgtacgggtgtcgttacaccgactgcactgctgcaa
cctgtgttagtagcgggaacgacggtaaagcgtgcatcgttacataatgaagacttgatt
cgtgaaaaagatatcaagctcggtgattatgttgtggtaaaaaaagccggtgacatcatt
ccggaagtcgtgaatgtaataacggagcgccgaactggtgatgagatcgattttaatatg
ccgaccgaatgcccggagtgcgacagcaagctagagcgtctggatggtgaagtagcttta
aggtgtttgaacccgcaatgtccggcacagattcgagaaggattcatacactttgtatcg
cgaaacgccatgaacattgatgggctaggcgaaaaggtagtcgcacagctgttcaaagaa
aaattaatccaaaactttgccgatttgtttaagctagagcgcgagaaactgttagaatta
gagcgtatgggcgagaagtcggtagataatctgcttgcagcaattgaaaagtcgaaagaa
aattcattagagcgtctgctgtttggacttggcattcgtcacgttggagcgaaagcggcg
aagacgatcgcgcagcgctttgaaaatatggatggtttgatgagtgcttctaaagaagag
cttttagctgttgaagaaatcggagaaaagatggctgactcgatccttctttatttttca
aagccagaagtgcacgagctcgtagctgaactgaagacccttggcatgaacatggaatac
aaaggtccaaagcttgtaaaagttgaagatctcgatactccgtttgctgggaaaacagtc
gtgttaacaggtaaactgtctattttgactcgtaatgatgcaaaggaacaattggaacgc
ttaggagcgaaagtgacaggaagcgtgagtaagaatacagatatgctgatcgcgggagaa
gatgctggatctaagcttgataaagcgaagacgctaggcattgagatttgggatgagcaa
aaattggtggacgagcttaacaaataa
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integrated database retrieval system
