Fusobacterium polymorphum: ERS445057_00329
Help
Entry
ERS445057_00329 CDS
T08899
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpol
Fusobacterium polymorphum
Pathway
fpol03030
DNA replication
fpol03410
Base excision repair
fpol03420
Nucleotide excision repair
fpol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERS445057_00329 (ligA)
03410 Base excision repair
ERS445057_00329 (ligA)
03420 Nucleotide excision repair
ERS445057_00329 (ligA)
03430 Mismatch repair
ERS445057_00329 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpol03032
]
ERS445057_00329 (ligA)
03400 DNA repair and recombination proteins [BR:
fpol03400
]
ERS445057_00329 (ligA)
Enzymes [BR:
fpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ERS445057_00329 (ligA)
DNA replication proteins [BR:
fpol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ERS445057_00329 (ligA)
DNA repair and recombination proteins [BR:
fpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ERS445057_00329 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERS445057_00329 (ligA)
MMR (mismatch excision repair)
DNA ligase
ERS445057_00329 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ERS445057_00329 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
EAD10
PdxA
UPF0758_N
Ribosomal_S13
HTH_22
Motif
Other DBs
NCBI-ProteinID:
CKG68252
LinkDB
All DBs
Position
1:complement(337234..339324)
Genome browser
AA seq
696 aa
AA seq
DB search
MEIKKRIEELKNNHTGLTLYSSQELNDLEKIVKLREDLDKYRDSYYNDNKSLISDYEFDI
LLKELESLEEKYPQYKETSSPTTSVGASLKENKFKKVEHAHPMLSLANSYNIGEIVDFIE
RIKKKISKEQELKYCLEVKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIV
KTLPQAIDMEIRGEVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERG
LDAYFYFLVEADKLGLKSHSESIKFLEAMGIKTTGIFELLETSKDIEKRIDYWEKERENL
PYETDGLVIKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPV
AELEEVELSGSKVKRASLHNISEIQRKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEK
VIEEPTHCPVCNHKLEREEGLVDIKCINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEK
FIDLGYIKTVVDIFDLKEHKEALENIDKMGKRSIENLLNSIEESKNRDYDKVIYSLGIPF
IGKVASKVLAKASRNIDKLMTMTFEDLTSIEGIGEIAANEIIAFFNKEKNQKIIQGLKEK
GLKFEIKESEINVQNVNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSISKNLDY
LIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaagaagagaattgaggaattaaaaaataatcatacaggacttacactttac
tcatcacaagaattaaatgatttagaaaaaatagttaaattaagagaagacttagataaa
tacagagattcttattacaatgataacaaaagtctaatttcagactatgaatttgatatt
ttattaaaagaattagaaagtttagaagaaaaatacccacaatataaagaaacttcttct
ccaaccacatctgttggagcaagtttaaaagaaaataaatttaaaaaagttgagcatgct
cacccaatgttaagtttggctaatagttataatattggagagattgtagactttattgaa
agaattaagaagaaaatttcaaaagaacaagaattaaaatattgtttagaagttaaactt
gatggcttgtctatcagtctaacttacagacaaggaaaacttgttagagctgtaactcgt
ggagatggacttataggagaagatgttacagaaaacattttagaaatagcaagtattgtt
aaaactttaccacaagctattgatatggaaatcagaggagaagttgtactacctttagcc
agctttgaaaaattaaataatgaaaggttagaaaaaggagaagaactttttgccaatcca
agaaatgctgcaagtggaactttaagacaattagattcaaaaattgtaaaagaaagaggt
ttagatgcctatttctatttcttagttgaagcagataaattaggtttaaaatctcatagt
gaaagtataaaattcttagaagctatgggaataaaaacaacaggaatatttgaactttta
gaaacttcaaaagatatagaaaaaagaatagattattgggaaaaagaaagagaaaatctg
ccttatgaaacagatggtttagtaataaaggttgatgaaattaatctttggaatgaaatt
ggttatacaagtaagactcctagatgggcaatagcatataaattcccagcacatcaagtt
tcaactgtattaaatgatgtaacttggcaagtgggaagaactggaaaattgacaccagtt
gcagagctagaagaagttgagttatcaggaagtaaagtaaaaagagcaagtttacataat
ataagtgaaattcaaagaaaagatataagaataggggatagagtctttatagaaaaagct
gctgaaattatcccacaagtagtgaaagctataaaagaagaaagaactggaaatgaaaaa
gtaatagaagaacctactcattgccctgtatgtaatcataaacttgaaagagaagaaggc
ttagttgatataaaatgtatcaatgaagaatgtcctgcaaaagttcaaggagaaatagaa
tactttgtttcaagagatgctttaaatattatggggctaggctcaaaaatagttgagaaa
tttatagatttaggatatataaaaactgttgttgatatttttgatttaaaagaacataaa
gaagccttagaaaacattgataagatgggtaaaagaagtatagaaaatcttttaaattca
atagaagaaagtaaaaatagagattatgataaagttatttattcattaggaattcctttt
ataggaaaggttgcatctaaagtattggcaaaagcttcaagaaatattgataaactaatg
actatgacttttgaagatttaacttcaatagaaggaattggagaaatagctgctaatgaa
ataatagctttcttcaataaggaaaaaaatcaaaaaattatccaaggtttaaaagaaaaa
ggtttaaaatttgaaataaaagaaagtgaaattaatgttcaaaatgtaaatcctaacttt
gctggaaaaaatttcttatttacaggaacattaaaacatttcacaagagagcaaataaaa
gaggaaattgaaaaactaggtgggaagaatttaagttcaataagtaaaaacttagattat
ttaatagttggagaaaaagcaggaagcaaacttaaaaaagctcaagagattccaactata
aagatattgactgaagaagaatttattgaactaaaagataaatttgactaa
DBGET
integrated database retrieval system
