KEGG   Flavobacterium psychrophilum JIP02/86: FP1847
Entry
FP1847            CDS       T00548                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fps  Flavobacterium psychrophilum JIP02/86
Pathway
fps03030  DNA replication
fps03410  Base excision repair
fps03420  Nucleotide excision repair
fps03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FP1847 (ligA)
   03410 Base excision repair
    FP1847 (ligA)
   03420 Nucleotide excision repair
    FP1847 (ligA)
   03430 Mismatch repair
    FP1847 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fps03032]
    FP1847 (ligA)
   03400 DNA repair and recombination proteins [BR:fps03400]
    FP1847 (ligA)
Enzymes [BR:fps01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FP1847 (ligA)
DNA replication proteins [BR:fps03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FP1847 (ligA)
DNA repair and recombination proteins [BR:fps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FP1847 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FP1847 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FP1847 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FP1847 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia BRCT_2 PTCB-BRCT EcoRI RNA_ligase Zn_ribbon_Top1
Other DBs
NCBI-ProteinID: CAL43913
UniProt: A6H0N9
LinkDB
Position
complement(1682167..1684167)
AA seq 666 aa
MTVLQKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYFDENSPTQR
VGGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKALGDVPLEYICELKYDGASIS
ITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPFQSHFEGLEK
ARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGYTAK
SPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPECQTKLERKEGEANHY
CPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDNGLVKNYADLYDLSVEQILPL
ERMAQKSAENLVQGVQNSKNIPFENVLFALGIRYVGETVAKKLAKHYKNIDAIANANLLE
LVMVDEIGDKIAQSVVEFFDNQENISVLERLKNNGIQLAISEENNTVVSNKLLGKIFVVS
GVFEIYSRDELKKAIEDNGGKVGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDF
SALLTS
NT seq 2001 nt   +upstreamnt  +downstreamnt
atgaccgttttacaaaaaatacaatcattgcgtgaggagcttaatctccacaattataat
tattacgttttagataatcctacgatttcagattatgattttgatgtaaaactaactgat
cttcagtctttagaaaaaaataacccagaatatttcgacgaaaattcacccacacaacga
gttggtggtacaattacaaaaaacttcgaaaccctaaaacacgattacagaatgtattcg
ttagacaattcttattcgaaagaagatttgttagattgggaaaataggattcaaaaagca
cttggcgatgtaccgttagaatatatttgtgagctaaaatacgatggcgcctctatttct
attacttacgaaaacggtcgattggttcgagcggtaactcgtggcgatggttttcagggt
gatgatgtgaccaataatattaaaactataaaagcagttccaataaaactgaaaggcgat
tttcctgaaaaatttgacattcgtggagaaattattttgccctttgctggtttcgaaaaa
atgaatcaagatttgatagaaattggggaaactccttattctaacccaagaaatacagct
tcgggaagtttaaaattgcaggatagtgccgaagtggcaaaacgtcccttagattgtttg
ctgtattcattaatcggaaataatttgccatttcaatctcattttgagggattagaaaaa
gctagactttggggattcaaagttccaaaacaaagtcatttggctaaaaacatgaatgaa
gttttcgatttcataaatatttgggataaaaataggcatactttaccttacgaaacagat
ggggtagtcataaaagtaaatgatttgcacttgcaagatgagttaggttataccgcaaaa
tcaccacgttgggcaatagcatataagtttaaatcggaacaagtttttacacaattaaat
tcaatttcatatcaagttgggagaacaggatctatcacaccagtggcaaatctagaacct
gtacagttagcaggaacgattgtaaaacgtgcttctttgcacaatgcagaccagatagaa
aaattagatattagaataaatgataccgtttttgtagaaaaaggaggcgaaattatccct
aaaattattggtgtcgatttacaaaaaaggccttcaaattcccaaaagacggcttatatt
acacattgtccagaatgtcaaactaaattagaaagaaaagaaggagaagccaatcattat
tgtcctaatttttatggttgtcggccacaaattataggtagaatacagcattatatttcc
agaaaagccatggatattgaaggtttgggaggagaaacggttgctttattatatgataat
ggattggtaaaaaactatgccgatttgtatgatttatcagtagaacaaattttgccattg
gaaagaatggcacaaaaaagtgccgaaaatttagtacaaggtgttcagaattctaaaaat
attcctttcgaaaatgttttgtttgcactcgggattcgctatgtaggggaaacggttgct
aaaaagttagccaaacattacaaaaatattgatgctattgctaatgctaatttactcgaa
ttggtcatggtagatgaaattggagataaaattgcacaaagtgtagtcgaatttttcgat
aatcaggaaaatataagtgttctagagaggttaaaaaataacggaattcagttagcaatc
tctgaagaaaataatacagttgtttcgaataagcttcttggtaaaatatttgttgtttcg
ggagtttttgagatttattctcgtgacgagttaaaaaaagcaatcgaggataatggtggt
aaagtggggagttctatttctgcaaagacaaattatgtaattgcagggcaaaacatgggg
ccagcaaaattagaaaaagcaaaccaactaaaagtatcaattattagtgaaagtgatttt
agtgctttattaacttcgtaa

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