Franconibacter pulveris: ACBV55_16600
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Entry
ACBV55_16600 CDS
T10797
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpul Franconibacter pulveris
Pathway
fpul03030
DNA replication
fpul03410
Base excision repair
fpul03420
Nucleotide excision repair
fpul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACBV55_16600 (ligA)
03410 Base excision repair
ACBV55_16600 (ligA)
03420 Nucleotide excision repair
ACBV55_16600 (ligA)
03430 Mismatch repair
ACBV55_16600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpul03032
]
ACBV55_16600 (ligA)
03400 DNA repair and recombination proteins [BR:
fpul03400
]
ACBV55_16600 (ligA)
Enzymes [BR:
fpul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACBV55_16600 (ligA)
DNA replication proteins [BR:
fpul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACBV55_16600 (ligA)
DNA repair and recombination proteins [BR:
fpul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACBV55_16600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACBV55_16600 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACBV55_16600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACBV55_16600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
XES83170
LinkDB
All DBs
Position
complement(3490597..3492615)
Genome browser
AA seq
672 aa
AA seq
DB search
MDSIEEKLTQLRTTLRHHEFLYHVMDAPEIPDAEYDRLMRELRAMEEAHPELITPDSPTQ
RVGAMPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSADALVYCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGKDIPSRLEVRGEVFLPQAG
FEKINEEARRNGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHM
ARLQQFKKWGLPVSDRIRLCETPEAVLEFYRKVEADRPGLGFDIDGVVIKVDSLELQEQL
GFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVNVVLSERPEETRPVEFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFGLGKE
TLERLERMGPKSAQNLVDALEKAKQTTFARFLYALGIREVGEATAAGLAAYFGTLDALMA
ASIEELQKVPDVGVVVATHVFNFFEEESNREVIRELVEQVGISWPAPLVVKAEEIDSPFA
GKTVVLTGSLSQMSRDDAKARLEALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIEV
IDEAEMLRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaagaaaaactgactcaactgcgaaccacgcttcgccatcatgaattt
ctctatcacgtcatggacgcgcccgaaatcccggatgcggagtatgaccgcctgatgcgc
gaactgcgcgccatggaagaggcgcacccggaactgattacccccgattcgcccacccag
cgcgtgggcgctatgccgcttacggaattcagccaggtgcgtcatgaagtgccgatgctg
tcgctggataacgttttcgatgaagccagctttttggccttcaataagcgcgtgcaggac
cgactgaaaagcgccgacgcgctggtttattgctgcgagctgaagcttgacgggctcgcg
gtcagcctgctgtatgaaaacggcctgctggtgcgcgccgccacgcgtggcgatggcaca
acaggggaggatattaccctgaatgtgcgcactatccgcgctatcccgcttaaactgcac
ggcaaagatattccctcgcgcctggaagtgcggggcgaagtttttctgcctcaggcgggc
tttgaaaaaatcaacgaagaagcgcgccgcaatggcggcaaagtgttcgccaacccgcgt
aacgccgctgcgggctccctgcgtcagctcgacccgcgtattaccgcaaagcgtccactg
accttcttctgctatggcgtaggtctgctggaaggcggcgagctgccgcgcagccatatg
gcgcgcctgcagcaatttaaaaaatgggggctgccggtcagcgaccgcattcgcctgtgc
gagacgccggaagcggtgctggagttttaccgcaaagtagaggcggaccgccctggactt
ggtttcgatatcgacggcgtagtcatcaaagttgattcgctggagctgcaggaacagctg
ggctttgtcgctcgtgcgccgcgctgggctgtggcctttaaattcccggcgcaagaacag
atgactaccgtgcgcgatgtggaatttcaggttgggcgcaccggggctatcaccccggtg
gcgcgtcttgagccagtgcaggtcgcgggcgtgctggtaagcaacgccaccctgcataat
gccgatgaaattgaacgtctcggcctgcgtattggcgacagagtggtgattcgccgtgcg
ggcgacgttattccgcaggtcgtcaacgttgtgctttccgaacgcccggaagagacgcgc
ccggtcgaatttcccgcgcattgtccggtttgcggttctgatgtcgagcgcgttgaaggc
gaggcggtggcgcgctgtaccggcggactgatttgcggcgctcagcgtaaagaatcgctc
aagcattttgtctcccgccgtgcgatggatgtcgatggcatgggagataagataatcgat
caactggtggaaaaagagtacgtgcacacgccagcggatctgtttggccttggcaaagag
acgcttgagcgtcttgagcggatgggaccaaaatcggcgcaaaatctggtggacgcgctg
gagaaagcgaagcaaaccacttttgcccgctttttgtacgccctcggtatccgtgaggtt
ggcgaagcgacggcggccgggcttgccgcttacttcggcacgctcgacgcgctgatggcc
gcctcgattgaagagctgcaaaaagtgccggacgtcggcgttgtggtcgccacgcacgtc
ttcaacttctttgaagaagagagcaaccgtgaggttatccgggagctggttgagcaggta
ggcatcagctggcctgcgccgcttgtcgttaaagcggaagagatagacagcccgtttgcc
gggaaaaccgtcgtattgaccggctctttaagccagatgtcgcgtgatgacgctaaagcc
cgtcttgaggcgcttggcgctaaggtgagcggcagcgtttcaaagaaaaccgatatggtc
atcgctggcgaagcggcgggttctaagcttgccaaagcgcaggagctgggcatagaagtt
attgatgaagcggaaatgctgcgtctgcttggagagtga
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integrated database retrieval system
