Flavobacterium psychrophilum V3-5: IA03_09000
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Entry
IA03_09000 CDS
T03659
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpv
Flavobacterium psychrophilum V3-5
Pathway
fpv03030
DNA replication
fpv03410
Base excision repair
fpv03420
Nucleotide excision repair
fpv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IA03_09000
03410 Base excision repair
IA03_09000
03420 Nucleotide excision repair
IA03_09000
03430 Mismatch repair
IA03_09000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpv03032
]
IA03_09000
03400 DNA repair and recombination proteins [BR:
fpv03400
]
IA03_09000
Enzymes [BR:
fpv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IA03_09000
DNA replication proteins [BR:
fpv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IA03_09000
DNA repair and recombination proteins [BR:
fpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IA03_09000
NER (nucleotide excision repair)
GGR (global genome repair) factors
IA03_09000
MMR (mismatch excision repair)
DNA ligase
IA03_09000
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IA03_09000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
EcoRI
RNA_ligase
zf-C4_Topoisom
GspL_C
Motif
Other DBs
NCBI-ProteinID:
AIG30597
UniProt:
A0A076P2F6
LinkDB
All DBs
Position
complement(1938476..1940476)
Genome browser
AA seq
666 aa
AA seq
DB search
MTVLQKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYFDENSPTQR
VGGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKALGDVPLEYICELKYDGASIS
ITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPFQSHFEGLEK
ARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGYTAK
SPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPECQTKLERKEGEANHY
CPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDNGLVKNYADLYDLSVEQILPL
ERMAQKSAENLVQGVQNSKNIPFENVLFALGIRYVGETVAKKLAKHYKNIDAIANANLLE
LVMVDEIGDKIAQSVVEFFDNQENISVLERLKNNGIQLAISEENNTVVSNKLLGKIFVVS
GVFEIYSRDELKKAIEDNGGKVGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDF
SALLTS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttttacaaaaaatacaatcattgcgtgaggagcttaatctccacaattataat
tattacgttttagataatcctacgatttcagattatgattttgatgtaaaactaactgat
cttcagtctttagaaaaaaataacccagaatatttcgacgaaaattcacccacacaacga
gttggtggtacaattacaaaaaacttcgaaaccctaaaacacgattacagaatgtattcg
ttagacaattcttattcgaaagaagatttgttagattgggaaaataggattcaaaaagca
cttggcgatgtaccgttagaatatatttgtgagctaaaatacgatggcgcctctatttct
attacttacgaaaacggtcgattggttcgagcggtaactcgtggcgatggttttcagggt
gatgatgtgaccaataatattaaaactataaaagcagttccaataaaactgaaaggcgat
tttcctgaaaaatttgacattcgtggagaaattattttgccctttgctggtttcgaaaaa
atgaatcaagatttgatagaaattggggaaactccttattctaacccaagaaatacagct
tcgggaagtttaaaattgcaggatagtgccgaagtggcaaaacgtcccttagattgtttg
ctgtattcattaatcggaaataatttgccatttcaatctcattttgagggattagaaaaa
gctagactttggggattcaaagttccaaaacaaagtcatttggctaaaaacatgaatgaa
gttttcgatttcataaatatttgggataaaaataggcatactttaccttacgaaacagat
ggggtagtcataaaagtaaatgatttgcacttgcaagatgagttaggttataccgcaaaa
tcaccacgttgggcaatagcatataagtttaaatcggaacaagtttttacacaattaaat
tcaatttcatatcaagttgggagaacaggatctatcacaccagtggcaaatctagaacct
gtacagttagcaggaacgattgtaaaacgtgcttctttgcacaatgcagaccagatagaa
aaattagatattagaataaatgataccgtttttgtagaaaaaggaggcgaaattatccct
aaaattattggtgtcgatttacaaaaaaggccttcaaattcccaaaagacggcttatatt
acacattgtccagaatgtcaaactaaattagaaagaaaagaaggagaagccaatcattat
tgtcctaatttttatggttgtcggccacaaattataggtagaatacagcattatatttcc
agaaaagccatggatattgaaggtttgggaggagaaacggttgctttattatatgataat
ggattggtaaaaaactatgccgatttgtatgatttatcagtagaacaaattttgccattg
gaaagaatggcacaaaaaagtgccgaaaatttagtacaaggtgttcagaattctaaaaat
attcctttcgaaaatgttttgtttgcactcgggattcgctatgtaggggaaacggttgct
aaaaagttagccaaacattacaaaaatattgatgctattgctaatgctaatttactcgaa
ttggtcatggtagatgaaattggagataaaattgcacaaagtgtagtcgaatttttcgat
aatcaggaaaatataagtgttctagagaggttaaaaaataacggaattcagttagcaatc
tctgaagaaaataatacagttgtttcgaataagcttcttggtaaaatatttgttgtttcg
ggagtttttgagatttattctcgtgacgagttaaaaaaagcaatcgaggataatggtggt
aaagtggggagttctatttctgcaaagacaaattatgtaattgcagggcaaaacatgggg
ccagcaaaattagaaaaagcaaaccaactaaaagtatcaattattagtgaaagtgatttt
agtgctttattaacttcgtaa
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