Francisella philomiragia O#319-067: KU46_1979
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Entry
KU46_1979 CDS
T03619
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpx
Francisella philomiragia O#319-067
Pathway
fpx03030
DNA replication
fpx03410
Base excision repair
fpx03420
Nucleotide excision repair
fpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KU46_1979 (ligA)
03410 Base excision repair
KU46_1979 (ligA)
03420 Nucleotide excision repair
KU46_1979 (ligA)
03430 Mismatch repair
KU46_1979 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpx03032
]
KU46_1979 (ligA)
03400 DNA repair and recombination proteins [BR:
fpx03400
]
KU46_1979 (ligA)
Enzymes [BR:
fpx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KU46_1979 (ligA)
DNA replication proteins [BR:
fpx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KU46_1979 (ligA)
DNA repair and recombination proteins [BR:
fpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KU46_1979 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KU46_1979 (ligA)
MMR (mismatch excision repair)
DNA ligase
KU46_1979 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KU46_1979 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
RNA_ligase
HHH_3
HHH
Motif
Other DBs
NCBI-ProteinID:
AJI50145
LinkDB
All DBs
Position
complement(2008080..2010116)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISIDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDL
VDDNPQLKPSNSVLDRVGGEILAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKPDAQMVEMPTNCPV
CDSAIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGAKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTK
AQDLGVEVIFEEDLQNLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatctctatagactataaaactttaactaaagcacaattaaaa
tcatatattgatgatcttgcagagtatctaggcgaacaaagctatttgtatcatactata
gataagccagttattactgactcagactatgataagttattccgattattacaagattta
gttgatgataatccgcagcttaagccatcaaactcagtattagaccgtgttggtggagaa
attttagcaggatttgagactatcaagcataagaagaaaatgacatctcttgctaatgtt
tttagtctagaggagttgcgtgatttttatgacaagatagagtatgacattgagcttgaa
tgtgaacctaaaatggatggcttggctattagtatcttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtatccgaaaatgtcaaaacc
atccgcaatgttccacttaaactaaatacttcaaatcctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctcttaatgagtatatgcaaacgcat
gagaataaaacttttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagcgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacctattacaaagctttggc
tttactatcagtgataatatgtttttggcaaaaaacttctcagaagttgaagtgtatcac
cataagatgagtcatcagcgtgcagatttagcttatgatattgatggtttagtttttaag
gtcaataacattaaactacaagatactattggctacactgctagaggacctaagtgggct
atagcatataagttcccagctgaagaggttgagtcagaagtgctaaatgtagagtttcaa
gttggtagaacaggagcaattaccccagttgcaagacttaagccagttgcagttggtggt
gtaatagtttcaaatgcaactttgcataatatcaatgaaattaaacgcaaagatatccga
gtcggtgatagagtcattgtacgtagggcaggggatgtaattccagaagtcgtcaaaagc
ttaccacaatatcgtaagcctgatgcacagatggttgagatgccaacaaattgtccagtt
tgtgattcagcaattgagaatatcaacgatcaggctatatatcgttgtacaggaggatgg
cattgtcaggctcaaactactgagcgcttgaagcacttcgtctctcgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcagatttgatcaagtat
ccagcggatatttataagctcaattttgaacaattgacaggcttagaaagaatgggtgct
aaatcatcgcaaaatgttttagactctatcacaaaaagtaaagagccaagtttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtgtcatcagaagctttagccaat
cattttggtagtttagaaagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattctggcaagattccctaaatata
caaattgttgatgaattactaggcaattctattaatatccaaaatccagaaaaaattgag
caagcgcataatgagagttttacaaataaaactattgtgattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaactgatatggttatttgtggtgataatgcaggaagtaagcttaccaaa
gctcaagatttaggtgttgaggttatttttgaagaagatttgcaaaatttgttatga
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