Francisella philomiragia GA01-2794: LA55_1520
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Entry
LA55_1520 CDS
T03620
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpz
Francisella philomiragia GA01-2794
Pathway
fpz03030
DNA replication
fpz03410
Base excision repair
fpz03420
Nucleotide excision repair
fpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA55_1520 (ligA)
03410 Base excision repair
LA55_1520 (ligA)
03420 Nucleotide excision repair
LA55_1520 (ligA)
03430 Mismatch repair
LA55_1520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpz03032
]
LA55_1520 (ligA)
03400 DNA repair and recombination proteins [BR:
fpz03400
]
LA55_1520 (ligA)
Enzymes [BR:
fpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LA55_1520 (ligA)
DNA replication proteins [BR:
fpz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LA55_1520 (ligA)
DNA repair and recombination proteins [BR:
fpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LA55_1520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA55_1520 (ligA)
MMR (mismatch excision repair)
DNA ligase
LA55_1520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LA55_1520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJI54024
UniProt:
A0A0B6CU65
LinkDB
All DBs
Position
complement(1535978..1538014)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISIDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVISDSDYDKLFRLLQDL
VDDNPQLKPSNSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSTPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKPDAQMVEMPTNCPV
CDSAIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGTKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGNLESFREAKFEQLIEINDIGEIIAKNIASFWQDSLNIQIVDELLGNSINIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTK
AQQLGVEVILEEGLAGLI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatctctatagactataaaactttaactaaagcacaattaaaa
tcatatattgatgatcttgcagagtatctaggcgaacaaagctatttgtatcatactata
gataagccagttatttctgactcagactatgataagttattccgattattacaagattta
gtagatgataatccacagcttaagccatcaaactcagtattagatcgtgttggaggtgat
gttttagcaggatttgagactatcaagcataaaaagaaaatgacatctctggctaatgtt
tttagtctagaggagttgcgtgatttttatgataagatagagtatgacattgagcttgag
tgtgaacctaaaatggatggtctagcaatcagcattttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtctcagaaaatgtcaaaact
atccgcaatgtcccacttaaactaaatacttcaacccccccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctcttaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagagaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacctattacaaagctttggc
tttactatcagtgataatatgtttttggcaaaaaacttctcagaagttgaagtgtatcac
cataagatgagtcatcagcgtgcagatttagcttatgatattgatggtttagtttttaaa
gttaataacattaaattacaagatactattggctacactgctagaggacctaagtgggct
atagcatataagtttccagctgaagaggttgagtcagaagtgctaaatgtagagtttcaa
gttggtagaacaggagcaattaccccagttgcaagacttaagccagttgcagttggtggt
gtaatagtttcaaatgcaactttgcataatatcaatgaaattaaacgcaaagatatccga
gtcggtgatagagtcattgtacgtagggcaggggatgtaattccagaagtcgtcaaaagc
ttaccacaataccgtaagcctgatgcacagatggttgagatgccaacaaattgtccagtt
tgtgattcagcaattgagaatatcaatgatcaggctatatatcgttgtacaggaggatgg
cattgtcaggctcaaactactgagcgcttgaagcacttcgtctcacgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcagatttgatcaagtat
ccagctgatatttataaactcaattttgagcaattaacaggcttagaaagaatgggtact
aaatcatcgcaaaatgttttagactctatcacaaaaagtaaagagccaagtttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtatcatcagaagctttagccaat
cattttggtaatttagaaagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgcttcattctggcaagattccttaaatata
caaattgttgatgaattactaggcaattctattaatatccaaaatccagaaaaaattgag
caagcgcataatgagagttttacaaataaaactattgtgattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaactgatatggttatttgtggtgataatgctggaagtaagcttaccaaa
gcacaacaattaggtgttgaagttattttagaagaagggttagcaggtttaatatag
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