Frankia casuarinae: Francci3_3647
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Entry
Francci3_3647 CDS
T00320
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fra
Frankia casuarinae
Pathway
fra03030
DNA replication
fra03410
Base excision repair
fra03420
Nucleotide excision repair
fra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Francci3_3647
03410 Base excision repair
Francci3_3647
03420 Nucleotide excision repair
Francci3_3647
03430 Mismatch repair
Francci3_3647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fra03032
]
Francci3_3647
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_3647
Enzymes [BR:
fra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Francci3_3647
DNA replication proteins [BR:
fra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Francci3_3647
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Francci3_3647
NER (nucleotide excision repair)
GGR (global genome repair) factors
Francci3_3647
MMR (mismatch excision repair)
DNA ligase
Francci3_3647
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Francci3_3647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
Zn_Ribbon_TF
HHH_8
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ABD12999
UniProt:
Q2J6U3
LinkDB
All DBs
Position
complement(4355767..4357887)
Genome browser
AA seq
706 aa
AA seq
DB search
MSATAGTADESGVASAAASADERARAASLARELDEHAYRYYVLDSPTISDAEYDRLMAEL
AALEERHPDLRTPDSPTQKVAGSYSTLFTPVEHLERMLSLENVFDDDEFHQWAARVARES
EVDAWLCELKIDGLAVDLVYEDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVP
GLLEVRGEVFFPTAKFAELNAGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVH
GLGAQRGFEVTSQSAAYARFAELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDG
VVVKVDSFALQRRLGSTSKSPRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPV
LVAGSTVGLATLHNIDEVGRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPT
RCPECGTELVRPEGEVDIRCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLEAG
RVRDIGDIFHLTPESFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIRHVGPTAAR
ALARELRSLEAIAATSAEDLAAVEGVGPKIAGAVLDWFADERHRDILARIAAGGARLADV
GAEEGPRPLDGVTVVITGTLTDWSRDSAKEAVEARGGKVTGSVSRKTTAVVVGADPGASK
YDKARSLRIPMLDEAGFAVLLAQGVDAASKLAVPADGPEKAETPVE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgacggccggtacggccgacgaatccggcgtggcttcggcggcggcttcggcg
gacgagcgggcccgcgccgccagcctcgcccgcgagctcgacgagcacgcgtaccgctac
tacgtgctcgattccccgacgatctccgatgccgagtacgaccggttgatggcggagctc
gccgcgctggaggagcggcatcccgacctgcgcacaccggactcgccgacgcagaaggtg
gccggctcctactcgaccctgttcaccccggtcgagcatctcgaacggatgctgtccctg
gaaaacgtcttcgacgacgacgagttccaccagtgggcggcgcgcgtggcccgggaaagc
gaggtcgacgcctggctctgcgagctgaagatcgacgggcttgccgtggacctcgtctac
gaggatggttacctggtgcgtgccgcgacgcgcggcgacggccggacgggggaggacatc
acccccaacatccgcaccctggcgagcgtgccggtacggctgcgcgggccgcgggtgccc
gggctgctggaggtgcggggcgaggtcttcttcccgaccgcgaagttcgccgagctcaac
gccgggctggtggccgtggggggcaaaccgttcgcgaacccgcgtaacgccgcggccgga
tccctgcggcagaaggatccccgggtcaccgccacccggccgctggagatgattgtccat
ggcctgggcgcgcagcgcggcttcgaggtcacgtcccagtcggcggcctatgcccgcttc
gcggagctcgggctgcccgtcgccacccacttcgaggtcctggcgacggtgcccggcgtg
ctcgactacgtgcaccggtggggcgacgcgcgccacgacgtggtgcacgagatcgacgga
gtggtcgtcaaggtcgactcgttcgccctgcaacgccggttgggctccacctcgaagtcc
ccccgctgggcggtggcctacaagtatccgccggaggaggtcacgaccaagctgcgcgat
atccgggtgaacgtgggccgcaccggccgggtgacccccttcggggagctggagccggtc
ctggtcgccgggtccacggtgggcctcgcgaccctgcacaacatcgacgaggtcggtcgc
aagggggtgctcatcggggacacggtcgtcctgcgcaaggccggggacgtcatcccggag
atcgtcggcccggtcgtcgacctgcgagagggttccgagcgggccttcgtgatgcccacg
cgctgcccggagtgcggcaccgagttggtgcggcccgagggcgaggtcgacatccgttgc
ccgaacaccgtctcctgtcccgcgcagttgcgggagtcgatcttccatttcgcatcccgg
ggggcgatggacatcgacgggctcgggtacgagacggcgaccgccctgctcgaggcgggc
cgggtgcgtgacatcggcgacatcttccacctgacgcccgagtccttcgaggggctgcgc
gggttcgcgcagaagaaaatcgaccagattctgcggggggtcgaggccgcgcggcaccgg
ccgctttggcggctgctggtcggcctgtcgatccgccacgtcgggcccacggcggcgcgg
gcgctggcccgggaactgcggtcgctggaagcgatcgccgccacgtcggccgaggacctc
gccgcggtcgaaggggtcggtccgaagatcgccggcgcggtgctcgactggttcgccgat
gaacggcaccgcgacatcctcgccaggatcgccgccggcggggcacggctcgccgacgtc
ggcgcggaggagggcccacgtcccctcgacggcgtcaccgtcgtcatcaccggcacgctc
accgactggagccgcgactcggccaaggaggcggtcgaggcgcgcggcggcaaggtcacc
ggctcggtgagcaggaagaccaccgccgtcgtcgtcggcgcggatccgggggcctcgaag
tacgacaaggcgcgcagtctcaggatccccatgctggacgaggccggattcgccgttctg
ctggcgcagggggtcgacgcggccagcaagctcgccgttcccgccgacggtcccgagaag
gccgagaccccggtggaataa
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