Francisella frigiditurris: KX01_939
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Entry
KX01_939 CDS
T05636
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
frc
Francisella frigiditurris
Pathway
frc03030
DNA replication
frc03410
Base excision repair
frc03420
Nucleotide excision repair
frc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
frc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KX01_939 (ligA)
03410 Base excision repair
KX01_939 (ligA)
03420 Nucleotide excision repair
KX01_939 (ligA)
03430 Mismatch repair
KX01_939 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
frc03032
]
KX01_939 (ligA)
03400 DNA repair and recombination proteins [BR:
frc03400
]
KX01_939 (ligA)
Enzymes [BR:
frc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KX01_939 (ligA)
DNA replication proteins [BR:
frc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KX01_939 (ligA)
DNA repair and recombination proteins [BR:
frc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KX01_939 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KX01_939 (ligA)
MMR (mismatch excision repair)
DNA ligase
KX01_939 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KX01_939 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
RNA_ligase
HHH
Rnk_N
Motif
Other DBs
NCBI-ProteinID:
APC97909
UniProt:
A0A1J0KVT8
LinkDB
All DBs
Position
931095..933134
Genome browser
AA seq
679 aa
AA seq
DB search
MNSEFLQKDYSKLNKTNLQAEITKLADYLMHHSYLYHTLDKPEISDGDYDRLFALLNDLV
DQNPELRPKNSVLDRVGGEILSGFETIKHKKKMLSLSNVFSLDELESFCNKIEYENIEFE
CEPKMDGLAISIFYKHGQFDYAVTRGDGVQGENVSENVKTIRNIPLVLNLENPPEELEVR
GEIILDKKSFLALNNQVVESGHKPFANPRNAAAGSIRMLDSKIVAKRPLKLYCYGVGYFT
DDFNHPKTQFQLMSYLKEIGFTISEDVFLAKSFSDIEKYHKAMSHKRADLAYDIDGLVFK
INDISLQDAIGYVARAPKWAVAYKFPAEEVESEVLNIEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNISEIRRKDIRVTDRVIVRRAGDVIPEVVRYLPEYRNPKATLIEMVKECPV
CGSAVENVNDQVVYRCTGGWHCKAQTSERLKHFVSRKAMDIDKLGAKIIEQLVEVDLIKY
PADIYKLTYQELCSLERMGSKSSQNVLDSIEKSKSPTLAKFIYSLGIRDVGEVSSESLAQ
HFGTLNAFRQAGYDDLIQINDIGEIIANNIVSFWQDTLNINIVESLLSAEVQIQEQAIIK
QIENSVFTDKTIVITGTFEKYNRDNLTQLLKSMGAKVTSSVSKKTDILVCGDNAGSKLEK
AQSFGVEIVLEDRLEELLK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagaatttttacaaaaagattactcaaaattaaataaaactaatctacaggca
gaaattactaaacttgctgattatttaatgcatcatagctatttatatcatacgttagat
aaacctgaaatatctgatggtgattatgatagattatttgctttattaaatgatttggta
gatcaaaatcctgaattaagaccaaaaaattctgtattagatagagttggtggagaaatt
ctttctggttttgaaactataaagcataaaaagaaaatgctttctttatctaatgttttt
agtttagatgagttagaaagcttctgtaataagattgaatatgaaaatatagaatttgag
tgtgagccaaaaatggatggcttagctattagtattttctataagcatgggcagtttgat
tatgcagttactaggggcgatggtgttcaaggggagaacgtttcagagaatgtcaaaact
attagaaatattcctttagttttaaacctcgaaaatcctccagaagagttagaagttaga
ggggaaattattcttgataaaaagagttttttagcactaaataatcaagttgttgaaagt
ggtcataaaccttttgctaatccaagaaatgcagcagcaggtagtattaggatgcttgac
tcaaaaattgtagctaaaagacctctaaagctgtattgttatggagttggttatttcact
gatgattttaatcatccaaaaactcaatttcagctaatgagttatctcaaagaaataggt
tttactattagtgaagacgtgtttttagcaaaaagcttttctgatatagaaaaatatcat
aaagcgatgagtcataagagagcagatttagcatatgatattgacggtctggtttttaaa
ataaatgatatttcattacaggatgctattggatatgtagctagagcgcctaaatgggct
gtggcttataaatttccagccgaagaggttgaatctgaagttttaaatattgaatttcag
gtgggtagaacaggtgctataacccctgttgctaggttaaaaccagtagctgttgggggt
gttatagtatcaaacgcaacattacacaatataagtgagattagacggaaagatattcgt
gtaacagatagggtcattgttcgtagagctggggatgttattcctgaagttgtcagatat
ttacctgaatatagaaatcccaaagccactcttattgaaatggtaaaagagtgtccagtt
tgtggttcagctgttgagaatgtaaatgatcaagtagtatatagatgtactggaggttgg
cattgtaaagctcaaacttcagaaagacttaagcactttgtttctagaaaagctatggat
attgataaacttggagctaagataattgaacagctagtcgaggttgatttaattaagtat
ccagcagatatttataagttaacgtatcaagaactttgttctttagaaaggatgggttct
aaatcatcacaaaatgttttggactctatagaaaaaagtaagagtccaacattagcaaaa
tttatttattcacttggtataagagatgttggagaggtttcttcagaatctttagcgcaa
cattttggaacattaaatgcttttaggcaggcaggttatgatgatcttattcaaataaat
gatattggtgaaattatagctaataatatagttagtttttggcaagatactttaaatata
aatatagttgaaagcctattgagtgctgaagtgcaaatacaagagcaagcgattattaag
cagattgagaatagtgtatttacagataaaactatagtgataactggcacatttgaaaaa
tataatagggataacttaacacagctcttaaaatcaatgggagcaaaagtaactagtagt
gtttcaaaaaagacagatatcctagtttgtggggataatgctgggagcaaattagaaaaa
gcacaaagttttggtgttgagattgtgctcgaagataggcttgaggagttacttaagtga
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