Francisella sp. LA112445: FIP56_07530
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Entry
FIP56_07530 CDS
T08878
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
frl
Francisella sp. LA112445
Pathway
frl03030
DNA replication
frl03410
Base excision repair
frl03420
Nucleotide excision repair
frl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
frl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIP56_07530 (ligA)
03410 Base excision repair
FIP56_07530 (ligA)
03420 Nucleotide excision repair
FIP56_07530 (ligA)
03430 Mismatch repair
FIP56_07530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
frl03032
]
FIP56_07530 (ligA)
03400 DNA repair and recombination proteins [BR:
frl03400
]
FIP56_07530 (ligA)
Enzymes [BR:
frl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIP56_07530 (ligA)
DNA replication proteins [BR:
frl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIP56_07530 (ligA)
DNA repair and recombination proteins [BR:
frl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIP56_07530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIP56_07530 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIP56_07530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIP56_07530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
RNA_ligase
DUF6359
Motif
Other DBs
NCBI-ProteinID:
QIW10556
UniProt:
A0A7M3TCV1
LinkDB
All DBs
Position
complement(1552886..1554922)
Genome browser
AA seq
678 aa
AA seq
DB search
MNVNDFLSLNYSDLSQAELKVNIDKLADFLNHQSYLYHTLDKPIISDSDYDKLFKLLQDL
VDENPQLKPVNSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLDELKDFYEKIEYDVELE
CEPKMDGLAISIFYKNGEFDYAVTRGDGIQGEKVSENVKTIRNIPLKLNTANPPEELEVR
GEIILDKQSFLALNEYMQANENKTFANPRNAAAGSIRMLDSRVVAKRPLKLYSYGIGYFS
KDFIHPETQFDLMNQLKDFGFTISDNMFLAKNFAELEDYHNKMSHQRADLAYDIDGLVFK
VNNIKLQDAIGYTARGPKWAIAYKFPAEEVESEILNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIRRKDIRVGDRVIVRRAGDVIPEIVKSLAQYRKSAAKIVEMPSYCPV
CDSSIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAANLIKY
PADIYKLSFEQLINLERMGTKSSQNVLDSITKSKAPSLARFIFSIGIKDIGEVSSEALAN
HFGSLDNFKKATIEELIEINDIGEIMANNIVSFWQDSLNVNIVDDLLSVRIDIQNPEKVE
LETNDNFAGKTVVITGTFENYNRTELTQLLKSVGAKVTSSVSKKTDMVIYGDNAGSKLTK
AQDLGVDVINEEQLKDLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttaatgattttctttctctaaactatagtgatcttagtcaagcagagttaaaa
gtaaatattgataagctagcagattttcttaatcatcaaagctatctgtatcatacctta
gataagccaataatttctgattctgactatgacaagctttttaaattgcttcaagattta
gttgatgagaatcctcagctcaaacctgtaaactcagtacttgatcgagttggtggagag
gtgctagcaggctttgaaactattaagcataaaaagaaaatgacttctttagctaatgtt
tttagtcttgatgagcttaaagatttctatgagaaaattgaatatgatgttgagcttgag
tgtgagcctaaaatggatggcctagctattagcattttctataaaaatggtgagtttgac
tatgctgtgacacgtggtgatggtattcaaggtgaaaaggtttctgagaatgttaagact
attagaaatatcccacttaaattaaatacagcaaatccgcctgaagagttagaggttcgt
ggtgagattattttagataagcaaagttttttagctcttaatgagtatatgcaggctaat
gaaaataaaacttttgcaaatccacgtaatgcagcagctggaagtatccggatgttggat
tcaagagttgtagcaaagcgaccgttaaaactatacagctatggtataggctatttttca
aaagactttatccatccagaaacacagtttgatttgatgaatcagttaaaggattttggc
tttactatcagtgataatatgtttttagcaaaaaattttgcggagcttgaagattaccat
aataaaatgagtcatcaacgtgctgatttggcatatgatattgatggtttggtttttaaa
gtaaataatattaaattgcaagatgctattggttataccgcgagaggtcctaagtgggct
attgcttataaatttccagcagaagaggttgagtctgagattttaaatgtcgagtttcaa
gttggtaggacaggtgctattactcctgtagctaggcttaaaccagttgctgtcggtggt
gtgatagtttcaaatgctacattacacaatatcaatgaaattagacgtaaagatattcga
gtaggtgatagggtgatagtgcgtagagctggtgatgttattcccgagattgttaaatca
ttagcgcaatatcgtaaatcagctgctaaaatagtcgaaatgccatcatattgtccagtt
tgtgactcatctattgagaatatcaatgatcaagctatttatcgttgtactggggggtgg
cactgtcaagcacagactacagagcgtttaaaacactttgtatcacgtaaagctatggat
attgataagctaggtgcaaagctgatcgagcaattagttgctgcaaatttgattaaatat
cctgcggatatatataagcttagttttgaacaactaattaacttagaaagaatgggaact
aaatcatcacagaatgttttagattctattactaaaagtaaggctccaagcctagcaaga
tttattttctctataggaattaaagatattggtgaagtttcatcagaagcactggcaaat
cattttggtagtttagataacttcaaaaaagcaactattgaggaacttattgaaattaac
gatattggtgagattatggctaataatatcgtttccttttggcaagattcactaaatgta
aatatcgttgatgatcttctaagtgttcgaattgatatacaaaatcctgagaaagtcgag
ttagaaactaatgataattttgcaggtaaaactgtagttattacaggtacttttgaaaat
tataatcgtaccgaacttactcagcttctaaagtcagttggcgcaaaggttacttcaagc
gtttctaaaaagactgatatggttatctatggagataatgctggtagcaaacttacaaaa
gcacaagatttaggtgttgatgttataaatgaagaacaattaaaagatctattatga
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