Frigoribacterium sp. NBH87: F1C15_04620
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Entry
F1C15_04620 CDS
T06748
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
frn
Frigoribacterium sp. NBH87
Pathway
frn03030
DNA replication
frn03410
Base excision repair
frn03420
Nucleotide excision repair
frn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
frn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1C15_04620 (ligA)
03410 Base excision repair
F1C15_04620 (ligA)
03420 Nucleotide excision repair
F1C15_04620 (ligA)
03430 Mismatch repair
F1C15_04620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
frn03032
]
F1C15_04620 (ligA)
03400 DNA repair and recombination proteins [BR:
frn03400
]
F1C15_04620 (ligA)
Enzymes [BR:
frn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F1C15_04620 (ligA)
DNA replication proteins [BR:
frn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F1C15_04620 (ligA)
DNA repair and recombination proteins [BR:
frn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F1C15_04620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1C15_04620 (ligA)
MMR (mismatch excision repair)
DNA ligase
F1C15_04620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1C15_04620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QNE45153
LinkDB
All DBs
Position
complement(987137..989458)
Genome browser
AA seq
773 aa
AA seq
DB search
MAAAAADAEVPDDLATARDEVEALTSRVLELRDQYYEGNASTVSDADYDALVRRLDALER
AHPELQKPDSPTQTVGGRAETTQFAPVEHAERMLSLDNVFSDDELAEWAGKVERDAGAER
VRFLCELKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTANVLTMGTIPERLSGTGHPAI
VEVRGEIFFPVAEFDQLNARQREAGERVFANPRNAAAGSLRQKIEGKSPAKRELMDARLR
SLRMLVHGIGAWPVRELERDTEVRAQSEVYELLASWGLPTSTHYRVYDTVPEVARFIHDY
GVRRSSVEHQIDGIVVKVDDLALHDELGATSRAPRWATAFKYPPEEVNTELLDIVVSVGR
TGRATPFAVMRKVEVAGSEVRQATLHNQHVVRAKGVLIGDTVVLRKAGDVIPEVLGPVVE
LRDGSEREFVMPVDCPECGTPLAPAKEGDVDLRCPNAESCPAQVRGRVEHIASRGSLDVE
GLGEVAAAALTQPVEPAEPPLRTEAGLFDLTMADVFPVKVVVRDSETGMEKLGDDGAPKL
VTPFRRRRGKADGPFDPEAAEFAGDETSVPSKTAIEMLANLQAAKTSPLWRILVGLSIRH
VGPVAARALANHFGSLHAMRSASRDELAAVDGVGGIIADALLAWFEVDWHVEILDRWAAA
GVQFDTPGHPGPGAAVEAGGVLAGLTVVATGSLEGFSREGAQEAILAAGGKAGNSVSKKT
DFVAAGPGAGSKLTKAEQLGVRIIDADQFRVLLKEGPAAFADPSSGGVDDPEA
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atcgccgccgccgccgctgacgccgaggtgcccgacgacctcgcgaccgcgcgcgacgag
gtcgaggcgctgacgtcgcgcgtgctcgagctgcgcgaccagtactacgagggcaacgcc
tcgacggtgagcgacgccgactacgacgccctcgtgcgtcgcctcgacgccctcgagcgc
gcccaccccgagctgcagaagcccgacagcccgacgcagaccgtgggcggccgggccgag
acgacgcagttcgcgccggtcgagcacgccgagcgcatgctcagcctcgacaacgtcttc
agcgacgacgagctcgccgagtgggcgggcaaggtcgagcgcgacgccggcgccgagcgc
gtgcgcttcctctgcgagctcaagatcgacggcctcgcgatcaacctgcgctacgagcac
ggcgtgctcgtcacggccgccacccgcggcgacggggtcgtcggcgaggacgtcacggcg
aacgtgctcaccatgggcacgatccccgagcggctcagcggcaccgggcacccggcgatc
gtcgaggtgcggggcgagatcttcttccccgtcgccgagttcgaccagctgaacgcccgg
cagcgcgaggccggcgagcgcgtcttcgcgaacccgcgcaacgccgcggccggctcgctg
cgccagaagatcgagggcaagagcccggccaagcgcgagctgatggacgcgcggctgcgc
agcctgcggatgctcgtgcacggcatcggcgcctggcccgtccgcgagctcgagcgcgac
accgaggtccgcgcccagagcgaggtctacgagctgctcgcgtcgtggggcctgccgacc
tcgacgcactaccgcgtgtacgacaccgtgcccgaggtcgcccggttcatccacgactac
ggggtcaggaggtcgtcggtcgagcaccagatcgacggcatcgtcgtcaaggtcgacgac
ctcgcgctccacgacgagctcggggcgacgagccgggcgccccggtgggccacggccttc
aagtacccgccggaggaggtcaacaccgagcttctcgacatcgtcgtgagcgtcggccgc
accggccgcgccacgccgttcgcggtgatgcgcaaggtcgaggtggccggcagcgaggtc
cgccaggcgacgctccacaaccagcacgtcgtccgcgccaagggcgtgctgatcggcgac
accgtcgtgctccgcaaggccggcgacgtgatacccgaggtgctcggcccggtggtcgag
ctccgcgacggcagcgagcgcgagttcgtcatgcccgtcgactgccccgagtgcggcacc
ccgctggccccggcgaaggagggcgacgtcgacctgcgctgcccgaacgccgagagctgc
ccggcgcaggtgcgcgggcgcgtcgagcacatcgcctcccgcggctcgctcgacgtcgag
gggctcggcgaggtcgcggcggccgcgctgacccagcccgtcgagcccgccgagccgccg
ctccgcaccgaggccgggctcttcgacctgacgatggccgacgtcttccccgtcaaggtc
gtcgtccgcgactccgagaccggcatggagaagctcggcgacgacggcgcgcccaagctc
gtcacgcccttccgtcgtcgccgcggcaaggccgacggcccgttcgaccccgaggcggcc
gagttcgccggcgacgagaccagcgtgccgtcgaagacggccatcgagatgctcgccaac
ctgcaggcggcgaagaccagcccgctctggcggatcctcgtcgggctgagcatccgccac
gtcggccccgtggccgcccgcgcgctcgcgaaccacttcggctcgctccacgcgatgcgc
tctgccagccgcgacgagctcgccgccgtcgacggcgtcggcggcatcatcgccgacgcc
ctgctcgcgtggttcgaggtcgactggcacgtcgagatcctcgaccgctgggccgctgcg
ggcgtccagttcgacacccccggccaccccggccccggcgccgccgtcgaggcggggggc
gtgctcgccggcctgaccgtcgtcgccacgggcagcctcgagggcttcagccgggagggg
gcacaggaggcgatcctcgcggcgggcggcaaggccggcaacagcgtgagcaagaagacc
gacttcgtggccgccggccccggtgccgggtccaagctcaccaaggccgaacagctcggg
gtacggatcatcgacgcggaccagttccgtgtcctccttaaggagggcccggccgcgttc
gctgaccccagttcggggggcgtcgacgacccggaggcctga
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