Faecalibaculum rodentium: AALO17_18310
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Entry
AALO17_18310 CDS
T04268
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fro
Faecalibaculum rodentium
Pathway
fro03030
DNA replication
fro03410
Base excision repair
fro03420
Nucleotide excision repair
fro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AALO17_18310
03410 Base excision repair
AALO17_18310
03420 Nucleotide excision repair
AALO17_18310
03430 Mismatch repair
AALO17_18310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fro03032
]
AALO17_18310
03400 DNA repair and recombination proteins [BR:
fro03400
]
AALO17_18310
Enzymes [BR:
fro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AALO17_18310
DNA replication proteins [BR:
fro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AALO17_18310
DNA repair and recombination proteins [BR:
fro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AALO17_18310
NER (nucleotide excision repair)
GGR (global genome repair) factors
AALO17_18310
MMR (mismatch excision repair)
DNA ligase
AALO17_18310
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AALO17_18310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Dna2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AMK54965
UniProt:
A0A140DWD8
LinkDB
All DBs
Position
complement(1647243..1649240)
Genome browser
AA seq
665 aa
AA seq
DB search
MDEALRIQQLRKQLETYAREYYIQDAPTVTDQEYDRLMHELEDLEAGHPELADPNSPTQR
VIGAILPGFEKYTHARRMLSLGDIFSREELEEFVARVRKEFPGASFVAECKYDGLAMALH
YEDGRFVRAVTRGDGLTGEVVTANVRTIRSVPMYIDAPGHVEVRGEVYMPKVSFERLNEV
QTTLHLPLFANPRNAAAGSIRNLETSVAASRNLEIFLYWYQNALEHGINTQARALEAMHA
MGFPVNMDFAVCDTVDELWAFIEKTREKRSSLPYEIDGVVIKVNSLEQEEALGLNAKTPR
YAIAYKYPAQEVQTRLDDIFLTIGRTGVATPNAVLTPVRVAGTLVSAASLHNEDLIRDRD
LRIGDTVIIRKAGDIIPEVIASVKERRDGTQVPYVFPGTCPVCGSELIRLPEEADHFCTN
PDCPAQVLGSLIHFVSREAMNIDGLGEKKVRQLHEAHLLDTIQDIYHLAEKREEILALHG
WSDKGFDKLLANIDGSRQRSLADLLFGLGIRLVGRKAAGLLADAFGSMDAIMAATKEELA
AVKYIGGTTAESLTTWFAQPANQGLIQSLKEAGLNMVQAPKEVPSVSSPFAGKTVVLTGT
LSGMSRNEAKALLESLGATVAGSVSKKTDLVIYGDKAGSKLAKAQELGVATMPEAEFLQE
AGHVA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagccctgagaatacagcagctgcgaaagcagctggaaacctacgcgagagaa
tactacatccaggatgcgcccacggtgacagaccaggagtacgaccggcttatgcacgag
ctggaggacctggaagccgggcacccggagctggcggatcccaattcgccgacacagcgc
gtcattggcgcgatcttgccggggttcgagaaatatacccacgccagacggatgctgtct
ctgggagacatcttttcccgggaagagctggaggaatttgtggcgcgggtccggaaggag
tttcccggcgcctcctttgtggcggaatgcaagtacgacggcctggccatggccctgcac
tatgaagatgggcggtttgtccgggcggtgacccggggtgacggactgaccggggaggtc
gtgacagccaatgtccgcaccatccggtcagtacccatgtatatcgatgcacccggtcat
gtggaggtccgcggggaagtctacatgccgaaggtgagctttgagaggctcaacgaagtg
cagaccaccctgcacctgccgctgtttgccaatccccgcaacgcggcagcggggtccatc
cgcaatctggaaacctccgtggcagccagccggaacctggagattttcctgtactggtac
cagaatgcgctggagcatggcatcaatacacaggccagagccctggaagccatgcacgcc
atggggttcccggtgaacatggactttgcggtgtgtgacacggtggacgaactgtgggca
ttcatcgaaaagacccgggagaagagaagcagcctgccctatgaaatcgacggcgtggtg
atcaaggtcaacagcctggagcaggaggaagccctgggtctcaatgccaagaccccgcgg
tatgcgattgcctacaagtacccggcacaggaagtgcagacccgtctggatgacatcttc
ctcaccattggccggaccggcgtggccacacccaatgcagtgctgacgcctgtacgggtg
gccggcaccctcgtgtctgcagccagcctgcacaacgaggacctgatccgggaccgggac
ctgcggatcggggatacggtgatcatccggaaagccggcgacatcatacctgaggtcatt
gccagcgtgaaggaacggcgggacgggacacaggtcccctatgtcttcccgggtacgtgt
cctgtctgcggcagcgaacttatccggctgccggaagaagcggatcacttctgcaccaac
ccggactgtccggcacaggtgctgggcagcctgatccactttgtgagccgggaagccatg
aacattgacgggctgggggaaaagaaggtccgccagctgcatgaggcacacctgctggac
acgatccaggacatttaccacctggcagagaaacgggaggagatcctggcactgcacggg
tggagcgacaagggattcgacaagctcctggccaacattgacggcagccggcagcgttcc
ctggcagacctgctcttcggtctggggatccggctcgtgggccggaaagccgcgggcctg
cttgctgatgccttcgggtccatggatgccatcatggcggccacgaaggaagagctggca
gccgtgaaatacattggcggcacaacagccgagagcctgaccacctggtttgcccagccg
gccaaccagggcctgatccagtccctgaaggaagccgggctgaacatggtgcaggccccg
aaggaagtgccgtctgtttcctcgccctttgcaggaaagaccgtggtactgaccgggact
ttatccggcatgagccgcaatgaggcaaaggccctgctggagtccctgggcgccactgtc
gcaggctctgtgtcgaagaaaaccgacctggtgatctacggggacaaagccggaagcaag
ctggcaaaggcacaggaactgggcgtggccacgatgccggaagcagagttcctgcaggag
gcaggccatgtcgcatag
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