Fibrobacter succinogenes: FSU_0529
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Entry
FSU_0529 CDS
T02105
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsc
Fibrobacter succinogenes
Pathway
fsc03030
DNA replication
fsc03410
Base excision repair
fsc03420
Nucleotide excision repair
fsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSU_0529 (ligA)
03410 Base excision repair
FSU_0529 (ligA)
03420 Nucleotide excision repair
FSU_0529 (ligA)
03430 Mismatch repair
FSU_0529 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsc03032
]
FSU_0529 (ligA)
03400 DNA repair and recombination proteins [BR:
fsc03400
]
FSU_0529 (ligA)
Enzymes [BR:
fsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSU_0529 (ligA)
DNA replication proteins [BR:
fsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSU_0529 (ligA)
DNA repair and recombination proteins [BR:
fsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSU_0529 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSU_0529 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSU_0529 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSU_0529 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
RNA_ligase
RUBY_RBDX
HMBD
Motif
Other DBs
NCBI-ProteinID:
ADL25202
UniProt:
C9RJM8
LinkDB
All DBs
Position
586238..588385
Genome browser
AA seq
715 aa
AA seq
DB search
MSEQKDIDRTRYFELKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELRGKG
SLTQKVGSDLTNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKKWIC
ERKIDGVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPSEIP
QGTFEVRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMRFFA
YHIPQSNNKTHEENLKQLKRLGFHTNDYWTADTVDEIMAISEKIGASRDSLPFDIDGMVV
KLNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVANLAPVRLA
GTTVKRATLHNFDEVARLDLHYGDTVGVEKGGEIIPKITDVKRELRPAGASPVVAPEKCP
VCGEQLTHIDGEVILRCENLHCKAQVQCLFEHFVSREAMNIENLGPALIASLLATGKIKR
IPDLYRLTLEDLESQERMAKKSAKNVFDAIQASKQRSLENLLHGLGIRFVGRTSARNIAK
HFRTLEKIRTATVEELQNVTDVGERIGKSVYEFFHTPLYTNEIDELVALGLPTEFKGVVK
TLFQGQTAVITGTLPNMDRDEARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANEL
GIPVHDEAWLMAQIANADESGDAPDENAGSSAGNFANEKASVSATPAEDQMSLNL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagcagaaagatattgaccgtacccgctattttgaattaaagaaacaactggaa
gaagctagccgtctttattacaaggacggggtctcccccatgagcgaccaggattttgac
tttgggctcaaggagatggaagcgctcgaggcgaagtatccggaattgcgcggaaaaggt
tcgctcacacagaaggtcggtagcgacctcacgaatgattttgcgaaggtggcacatgcg
gtgccgatgctcagcattgcaaacgtgtacagcgaagaagaaatgcgcgaatttgtgaag
gccgcagaagaaggtctctcgtctttcgtctctcgtctctcgtctaaaaaatggatttgc
gagaggaaaatcgacggagttagcctttcggtgatttacgagaatggccgcttgaagcag
gcggcaacgcgtggcgatggcgcccaaggcgatgacgtgacgttgaatgcgctcacgatt
gcagacattcctgaatattttgacgcgaagaaattgaagattgacccgagcgagattccg
cagggtacgttcgaagtccgcggtgaagtctacatggaacgcgaagcatttgaacgtttg
aacgagcagttcatcctggaaaacaagaagacgttccaaaactgccgcaacacggtttcg
ggctcgctcaagctcaagagcgttgccgaatgcaagacgcgcccgatgcgcttttttgca
taccacattccgcagagcaacaacaaaactcacgaagagaacttgaagcagctcaagcgt
ctcggtttccatacgaacgattactggaccgccgatacggtcgatgaaatcatggcgatt
tccgaaaagataggcgcaagccgcgacagtctcccgttcgatattgacggcatggtcgtg
aagctgaacgatttgcagcagcagcgagaactcggcagcacaagcaagagcccgcgctgg
gccatcgcttacaagttcaaggcggaacgtgcctacacaccgcttttgtctgtagaattc
caggtcggtcgcaccggtgccgtgacgccagtggcaaatctcgcacccgtgcgcctcgca
ggtacaaccgtcaagcgcgccaccctccacaacttcgacgaagtggcaaggctcgacttg
cactacggcgacaccgtcggcgtagagaagggtggcgaaatcatcccaaaaatcacggat
gtcaaacgcgaactgcgccctgccggagcctcccccgtcgtggcacccgaaaaatgcccc
gtgtgcggcgagcaactcacgcacatcgacggcgaagtgattctgcgttgcgaaaacttg
cactgcaaggcgcaagtgcaatgtctgttcgaacatttcgtaagccgcgaagcgatgaac
atcgaaaatctcgggccagcgcttatcgcaagtctccttgccaccggcaaaatcaagcgc
atcccagacctttaccgcctcacgctcgaagacctggaatcgcaggaacgcatggcgaag
aagagcgcgaaaaacgtctttgacgccatccaagcatcaaaacagcgcagtctcgaaaat
ctgttgcacggtctcggcatccgctttgtcggccgcaccagtgcccgtaacatcgcgaag
catttccgcacgctcgaaaaaatccgcacggcaacggtcgaagaattgcagaacgtgacc
gacgtgggtgaacgcatcggcaaatccgtctacgaattcttccacacgccgctttatacc
aatgaaattgatgaactcgtggcgctcggactcccgacggaattcaagggcgttgtcaag
actttattccaaggtcaaactgcagtcatcacaggaacgctcccgaacatggaccgcgat
gaagcgcgcaagctcatcgaagagaatggcggcaaggtttccggttccgtcagtaaaaag
acgagttgggttttggcaggagaagcggcaggttccaagctcaccaaggcaaacgagctc
gggattcccgtacacgacgaagcatggcttatggctcagattgcaaacgccgatgaatcc
ggcgacgccccagacgaaaatgcgggcagttccgcaggcaattttgcaaacgaaaaagca
agcgtttcagcaacgcccgcagaagatcaaatgtcgctaaatctctag
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