Flavobacterium sediminilitoris: LXD69_11075
Help
Entry
LXD69_11075 CDS
T08185
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsd
Flavobacterium sediminilitoris
Pathway
fsd03030
DNA replication
fsd03410
Base excision repair
fsd03420
Nucleotide excision repair
fsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LXD69_11075 (ligA)
03410 Base excision repair
LXD69_11075 (ligA)
03420 Nucleotide excision repair
LXD69_11075 (ligA)
03430 Mismatch repair
LXD69_11075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsd03032
]
LXD69_11075 (ligA)
03400 DNA repair and recombination proteins [BR:
fsd03400
]
LXD69_11075 (ligA)
Enzymes [BR:
fsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LXD69_11075 (ligA)
DNA replication proteins [BR:
fsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LXD69_11075 (ligA)
DNA repair and recombination proteins [BR:
fsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LXD69_11075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LXD69_11075 (ligA)
MMR (mismatch excision repair)
DNA ligase
LXD69_11075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LXD69_11075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DNA_ligase_A_M
EcoRI
Motif
Other DBs
NCBI-ProteinID:
UOX32584
LinkDB
All DBs
Position
2420849..2422849
Genome browser
AA seq
666 aa
AA seq
DB search
MDILQSIQVLREELNQHNYNYYVLDKPTISDFEFDTKLKELQDLEAKYPEFYDENSPTVR
VGGAITKNFDTIQHEYRMYSLDNSYSKEDLLDWQTRCQKILGDVDLEFTCELKYDGASIS
IQYENGKLKRAVTRGDGFQGDDVTNNVKTIKSVPIKLKNDFPEKFEIRGEIILPFLGFEK
MNQELIEIGETPYSNPRNTASGSLKLQNSAEVAKRPLDCLLYTLVGNNLPIKSQFEGLQK
ARDWGFKVPNESKLVKSINEVFEFINYWDTHRHELPYETDGVVIKINQVQYQEELGYTAK
SPRWAIAYKFKAEQVTTILNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIA
KLDIRIGDSVFVEKGGEIIPKIIGVNLEERKLENQPTTYITHCPECNTELIRIEGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIDGLGGETVALLYNAGLIKNYADLYELTKDQVIPL
ERMAEKSAENLINGIEKSKSIPFDSVLYALGIRYVGETVAKKLAKHYKNIDAIASASLMD
LILVDEIGEKIAKSVVLFFENEINIEIIERLKSSGIQFELDEKLNTNVSDKLSGKVFVVS
GVFEIYSRDNLKKAIEDNGGKVGSSISSKTDYVIAGDNMGPAKLEKANKLGIPIINEQEF
NVLIND
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatattttgcaatctattcaggttttaagagaagaattaaatcagcataattataat
tattatgttttagataaacctacaatttccgattttgaatttgatacgaaattaaaagaa
ttacaagatttagaagcaaaatatcctgaattttatgatgaaaactcaccaacagttaga
gtaggaggagctattacaaagaattttgatactattcagcatgaatatagaatgtattct
ttagataattcttattcgaaagaagatttactagattggcaaacacgatgtcaaaaaata
ttaggtgatgttgatttagaatttacttgtgagttgaaatatgatggagcttcaataagt
attcaatatgaaaatggtaaattaaagcgagcagttactcgtggagatggttttcaagga
gatgatgttacaaataatgttaaaacaataaaatcggttcctataaaattaaaaaatgat
tttccagagaaatttgaaattagaggagaaataattcttccttttttaggctttgagaaa
atgaatcaagagttaattgaaataggagaaacaccttattcaaaccctagaaatactgct
tcaggaagtttgaaattgcaaaatagtgcagaagttgctaaaagaccattagactgtttg
ttgtatactttggtagggaataatttacctattaaatctcaatttgaaggattacaaaaa
gcaagagattggggttttaaagtaccaaatgaatctaaattggtaaaaagtataaatgaa
gtttttgaatttattaattattgggatacacaccgtcatgaattaccttatgaaactgat
ggagttgtaattaaaataaatcaagttcaatatcaggaagagttaggttatacagctaaa
tcaccacgatgggctattgcttataagtttaaagcggaacaggttacaacaattttaaat
tctatatcttatcaagtaggaagaacaggagcaataacaccagttgctaatcttgaacca
gtacaattagcaggaaccattgtaaaaagagcttctttgcataatgcggatcaaattgca
aaattagatattagaataggagatagtgtttttgttgaaaaaggaggagagattattcct
aaaattattggagttaatttagaggaaagaaaattagaaaatcaacctacaacttatata
acgcattgtccagaatgtaatacggaattaattagaattgaaggagaagcaaatcattat
tgtcctaatttttatggatgtccacctcaaattataggaagaattcaacattatatctct
agaaaagctatggatattgatggtttaggaggtgaaacggttgctcttttatataatgca
ggtttaataaaaaattatgcagatttatatgagttaactaaagaccaagttattccactt
gaacgtatggcagagaagtctgctgagaatttaattaacggaatcgaaaaatctaaaagc
attccttttgatagtgttttatatgctttaggaattagatatgtaggagaaactgtggct
aaaaagctagctaaacattataaaaatattgatgcaatagcttctgcaagtttaatggat
ttaattctagttgatgaaattggagaaaaaattgcaaaaagtgtagtcttgttttttgaa
aatgaaataaacattgaaattatagaaaggcttaaaagtagtggaatacaatttgaatta
gatgaaaaattaaatacgaatgtatcggataaattatcagggaaagtatttgttgtttct
ggagtttttgaaatttattctagagacaatctaaaaaaagcaattgaagataatggagga
aaagtaggaagttcaatatcctcaaaaacagattatgtaattgcgggcgataatatggga
ccagctaaattagaaaaagcaaataagctaggaataccaattattaatgagcaagagttt
aatgtattgattaatgattaa
DBGET
integrated database retrieval system
