Fervidibacter sacchari: Q2T83_14405
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Entry
Q2T83_14405 CDS
T09227
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsh
Fervidibacter sacchari
Pathway
fsh03030
DNA replication
fsh03410
Base excision repair
fsh03420
Nucleotide excision repair
fsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q2T83_14405 (ligA)
03410 Base excision repair
Q2T83_14405 (ligA)
03420 Nucleotide excision repair
Q2T83_14405 (ligA)
03430 Mismatch repair
Q2T83_14405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsh03032
]
Q2T83_14405 (ligA)
03400 DNA repair and recombination proteins [BR:
fsh03400
]
Q2T83_14405 (ligA)
Enzymes [BR:
fsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q2T83_14405 (ligA)
DNA replication proteins [BR:
fsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q2T83_14405 (ligA)
DNA repair and recombination proteins [BR:
fsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q2T83_14405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q2T83_14405 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q2T83_14405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q2T83_14405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Auto_anti-p27
DUF2059
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WKU15513
LinkDB
All DBs
Position
complement(3125672..3127840)
Genome browser
AA seq
722 aa
AA seq
DB search
METMTVDEARQQVEQLRKQAVDKPVEALTREEAEREAERLRKELTIHCWLYYVLNSPIIS
DEEYDRLFRRLVQIEERFPDLVTPDSPTQRVGFPPAEEFAKVTHRKVMLSLDNAFNEEEL
RAFDQRVKRFLGLPATEVIDYTCELKIDGLAVNLTYENGVLVLGATRGDGVEGEDVTNNL
RTIKTIPLRLLIDNPPPVIEVRGEVFMTKADFEALNEEQIRRGERPFANPRNAAAGSVRQ
LDPNITAQRRLDIFCYGVGYYEGIEFETQWEVLQWLQRAGFKVNPHSRLCHGINEVIDYC
YEWVRRIHDEPYSADGVVVKVNRLDFQERLGATAHAPRWAIAFKFPAEQKETRLLNIVVQ
VGRTGKLTPVAELEPVQVEGVTITSATLHNEDQIKRLDVRIGDWVIVQRAGGVIPEVVGV
VKEKRTGEEKPFEMPKECPICGTPVVRPPGEVDYYCPNNECPSRVENWIKHWCSRNALNI
EALGEERIHQLVEAGLLSDPADLYFLQKWQLTRLPGWGDKLATKVLSEIQRSKTAPLSRF
IFALGIRHVGERVAELLAKKFGSLERLAQAEEWEIKTIPGVGPKIAESVVRFFRSELGQR
LMEKLKKAGIQPSPEEEAPVVPESPLKGKVVVFTGELERWTRSQAEEIVKRLGGRPASSV
SRQTDFLVVGQNPGSKLQRAQELGVRILTEEEFAAMVAPFLGEKQGTGDKGHSEEQPTLL
GS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgatgaccgttgatgaggctcgccaacaagttgaacaattgcgcaaacaagcc
gttgacaagcctgttgaggcgctgacccgagaggaggcggagcgagaagcggagaggctg
cgcaaagaattgaccatccactgttggctttactatgtgctcaactcacccatcatcagc
gacgaggaatacgaccgtttgtttaggcgcttggtgcaaattgaggaacgcttccctgac
cttgtgacgccagacagcccgactcaaagagttggtttcccgccggcggaagagtttgcc
aaagtgacgcaccgaaaggtgatgttgagtttagacaacgccttcaacgaagaggaattg
cgtgcctttgaccaaagggtcaagcgctttttgggtttgccggcgacagaagtcattgac
tacacctgcgagttgaagattgatggcttagcggtgaacttgacctacgaaaacggtgtt
ttggtcttgggtgcaactcgcggagatggtgttgagggtgaggatgtgaccaacaacttg
cgaactatcaaaaccatcccgcttcgcttgctcattgacaacccgcctccggtcattgag
gttcggggcgaagtctttatgacgaaagcggattttgaggcgctcaacgaagaacaaatt
cgcaggggcgaacgccccttcgctaaccccagaaatgctgcagcaggttccgtccgtcaa
cttgaccctaacatcacggctcagcgtcgtctggacatcttctgctacggtgtcggctac
tacgaggggattgagtttgagacgcagtgggaagtcttgcaatggcttcaacgggcaggc
ttcaaagttaacccgcacagccgcctctgtcacggcatcaacgaggtcattgattactgc
tacgagtgggttaggcgcatccacgacgaaccgtattccgctgacggagtcgtcgttaaa
gtcaacaggctggactttcaggaacgattgggggcgacggctcacgcaccgaggtgggca
atcgctttcaagttccctgccgagcaaaaggaaaccagactgctcaacatcgtcgttcaa
gtcggtcgcacagggaaactgacacctgtggctgaacttgagccagttcaggttgagggc
gtgacaatcaccagcgcgacactccacaacgaagaccaaatcaagcggcttgatgtccgc
attggtgattgggttatcgtccaaagggcgggtggcgttatccctgaggtcgtgggtgtc
gtcaaggagaagaggacgggtgaggagaaaccatttgagatgccgaaagaatgtcccatt
tgcggcacacccgttgtccgaccgcctggtgaggtggactactattgccccaacaacgag
tgtccatcgcgagttgaaaactggatcaagcattggtgctctcgcaatgccttgaacatt
gaagcgttgggagaggagcgaattcaccagttggttgaggcaggattgctcagtgacccc
gctgacctttacttcctgcagaagtggcaattaacgagattgcctggctggggtgataag
ttggcgacgaaagtcctcagcgaaattcagagaagtaaaacggcgcccttgtcaaggttc
atctttgcgttgggcatccgccatgtcggcgagcgggtggcagagttattggcgaaaaag
ttcggcagtctggaacggttggcgcaagcagaggagtgggaaatcaaaactatccctggc
gtcggtccaaaaatcgccgaaagtgttgtccggttcttccgaagcgaactggggcagagg
ttgatggagaagttgaagaaagcaggcatccaaccttcacctgaggaggaagcaccggtc
gtcccagaatcgcctctcaaaggcaaggtcgttgtcttcaccggtgaactggaaaggtgg
acgcgctcacaagcggaagaaattgtcaagaggcttggagggcgaccagcatccagtgtc
tctcggcaaacagactttctcgtcgtcggtcaaaatcccggtagcaagttgcaacgggct
caagagttgggtgttcgcatcttgactgaagaagaattcgcagcgatggtcgctcccttc
ttgggcgagaaacaagggacaggtgacaaaggacactcagaggagcaaccaacacttttg
ggtagttga
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