Flaviflexus salsibiostraticola: EJO69_05620
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Entry
EJO69_05620 CDS
T05752
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsl
Flaviflexus salsibiostraticola
Pathway
fsl03030
DNA replication
fsl03410
Base excision repair
fsl03420
Nucleotide excision repair
fsl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJO69_05620 (ligA)
03410 Base excision repair
EJO69_05620 (ligA)
03420 Nucleotide excision repair
EJO69_05620 (ligA)
03430 Mismatch repair
EJO69_05620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsl03032
]
EJO69_05620 (ligA)
03400 DNA repair and recombination proteins [BR:
fsl03400
]
EJO69_05620 (ligA)
Enzymes [BR:
fsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJO69_05620 (ligA)
DNA replication proteins [BR:
fsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJO69_05620 (ligA)
DNA repair and recombination proteins [BR:
fsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJO69_05620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJO69_05620 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJO69_05620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJO69_05620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AZN29837
UniProt:
A0A3S8Z8I8
LinkDB
All DBs
Position
complement(1214129..1216486)
Genome browser
AA seq
785 aa
AA seq
DB search
MSTKEFADAHARWQELADILLPAQTAYYLDERGESPISDAEYDRLMRELRELEEEFPQLS
TQDSPTKNVGADVAEAGDEAPAVFSPVTHRERMYSLEDAFDTDEVEAWFARVAREEGTPE
IEVVCEAKIDGLAVNLRYESGELVQAATRGDGTTGEDVTANVRTIASVPHRLTGDDWPDL
IEIRGEVFIALADFAAFNRRLEEDGARTFANPRNAAAGSLRQKDPAATASRPLSFIAHGI
GAVDGGSDVSSQLEIYERLESWGVPISPYTELVTGLDEALDFIERLGEKRHSLIHGMDGA
VIKVASRAMQRELGYTSRVPRWAIAYKYPPEEVHTRLLDIRVQIGRTGRATPYAVMEPVF
VDGSTVSQATLHNPSEVARKDVLIGDTVVLRKAGDIIPEVVGPVYRLRTGDEVPWTMPRH
CPSCGSVLAPSNEGEADWRCPNSKSCPAQLTERLAHVGSRGALDIEALGAETALMLTNPD
ARRDAAIASLIGGHTLLIDGRRVSLDTKAGRAAVADHGEPVPGEINPDLLDALGIPGPQA
PVLRNEAGLFDVRAEHLKDVFVWSEVRVKGEFQGDYRYARAAWTKPAYAKDGTVKTESVP
TKTTELLLREIEGAKTKELWRKIVALSIRHVGPTAARSLAARFGSLDAIAAASVEDLAET
DGVGRIIAESLTSWFEVDWHRDIVERWRAAGVRWEDEVDDELPQTLAGLTIVATGSLESY
TRDSVKEAIIARGGRASGSVSKKTDYVVVGENAGSKAAKAEELGVTILDEDQFTALLEGG
PDAIA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacgaaagaatttgcggatgcccatgcgcgctggcaggagctggccgacatcctc
cttcccgcgcagaccgcctactacctcgacgagcgcggcgagtcgccgatctccgatgcc
gagtatgaccggctcatgagggagctgcgtgagctggaggaggaattcccccagctcagc
acgcaggactccccaacgaagaatgttggcgccgatgtcgccgaggcgggtgatgaggcc
cccgccgtgttctccccggtcacgcaccgggagcgcatgtactcgcttgaggatgcgttt
gacacggacgaggtcgaggcctggttcgcgcgggttgcccgtgaggagggcacccccgag
atcgaggtcgtctgcgaggcgaagatcgatggtctcgccgtcaacctccgctacgagtcc
ggtgagctcgtccaggcggccacacgaggggacgggacgacgggcgaggacgtgacggcg
aatgtgcgcaccatcgcctcggttccccacaggctcacgggcgacgattggcccgatctc
atcgagatccgcggcgaggtcttcatcgcgctcgcggacttcgccgccttcaaccggcgg
ctcgaggaggacggggcgaggacgttcgccaaccctcggaacgcggccgcgggatcgctg
cggcagaaggacccggcggcgaccgcctcgcgcccgctctccttcatcgcccacggcatc
ggtgcggtcgacggcggcagtgatgtctcgtcccagctggagatctacgagcggctcgag
agctggggtgtgcccatctctccctacaccgagctcgtgacgggactcgatgaggcgctc
gacttcatcgagcgactcggggagaagagacactccctcatccacgggatggacggggcc
gtcatcaaggtggcgagccgcgccatgcagcgcgagctcggctacacctcccgcgtgccc
cggtgggcgatcgcctacaagtacccgcccgaggaggtccacacgaggctcctcgatatt
cgagtccagatcggccggaccggccgggcgacgccctacgcggtcatggaacccgtcttc
gtcgacgggtcgaccgtttcgcaggcgacgctccacaatccctccgaggtcgcacgaaag
gacgtcctcatcggcgacacggtcgtcctccggaaggccggcgacatcatccccgaggtg
gtcgggcccgtttaccggctgcggacgggcgatgaggtgccgtggacgatgccgagacac
tgcccgagctgcggctccgttcttgccccctccaacgagggggaggccgactggcggtgc
ccgaactcgaagtcctgtcccgcacagctgacggagcggcttgcccacgtcggctcacga
ggcgcacttgatatcgaggctctcggcgcggagaccgcgctcatgctgacgaacccggac
gcgcggcgggacgccgcaatcgcctccctcattggcggccacacgctcctcatcgacggg
aggagggtcagcctcgacacaaaggcgggcagggcggccgtggccgaccatggcgaaccc
gtcccgggcgagatcaaccccgacctgctcgacgccctcggcattcccggcccccaggcc
cccgttctgcgcaacgaggcgggcctcttcgacgtgagggcggagcacctgaaggacgtg
ttcgtctggagcgaggtcagggtcaagggagagttccagggggactatcggtacgcgcga
gcggcctggacgaagcccgcctacgccaaagacggcacagtcaagacggagtccgtcccg
acgaagacgacagagcttctccttcgcgagatcgagggcgcgaagacgaaggagctgtgg
cggaagatcgtcgcgctctcgatccggcacgtcggcccgaccgctgctcggtcactggcg
gcccggttcggctcactcgatgccatcgccgccgcctcggtcgaggacctcgccgagacc
gacggagtcggccgcatcatcgccgaatcgctgacgagctggttcgaggtcgactggcat
cgcgatatcgtcgagcgctggcgcgccgctggtgtgcggtgggaggacgaggtcgacgac
gagctgcctcagacccttgcgggcctgacgatcgtcgccaccggcagcctcgagtcctat
acccgcgattcggtcaaggaggcgatcatcgcccgcggcggcagggcatcgggttcggtg
tcaaaaaagaccgactatgtcgtcgtcggggagaacgccggctcgaaggccgccaaggcc
gaggagctcggtgtgacgatcctcgacgaggaccagttcacagcccttctcgagggcggc
ccagacgccatcgcctga
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integrated database retrieval system
