Flavobacterium sangjuense: GS03_01905
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Entry
GS03_01905 CDS
T06656
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsn
Flavobacterium sangjuense
Pathway
fsn03030
DNA replication
fsn03410
Base excision repair
fsn03420
Nucleotide excision repair
fsn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GS03_01905 (ligA)
03410 Base excision repair
GS03_01905 (ligA)
03420 Nucleotide excision repair
GS03_01905 (ligA)
03430 Mismatch repair
GS03_01905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsn03032
]
GS03_01905 (ligA)
03400 DNA repair and recombination proteins [BR:
fsn03400
]
GS03_01905 (ligA)
Enzymes [BR:
fsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GS03_01905 (ligA)
DNA replication proteins [BR:
fsn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GS03_01905 (ligA)
DNA repair and recombination proteins [BR:
fsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GS03_01905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GS03_01905 (ligA)
MMR (mismatch excision repair)
DNA ligase
GS03_01905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GS03_01905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
EcoRI
zf-C4_Topoisom
GspL_C
HHH
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
QBZ98400
UniProt:
A0A4P7PVJ2
LinkDB
All DBs
Position
2156610..2158610
Genome browser
AA seq
666 aa
AA seq
DB search
MDIQKTIQDLRDELNQHNHNYYVLDTPTISDFEFDQKLKQLQELENQHPEFYDDNSPTQR
VGGTITKNFNTVVHDYRMYSLDNSYSKEDLIDWETRIQKVLGNVPLQYTCELKYDGASIS
ITYENGKLKRAVTRGDGFQGDDVTNNIKTIKSIPLKLKGEYPARFDIRGEIILPFEGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSTEVAKRPLECLLYFIVGNNLNFDSQFDGLET
ARKWGFKVPKEAKLANTIEEVFEYINYWDTHRHHLPYETDGVVIKVNNLHQQDELGYTAK
SPRWAMAYKFKAEQVSTTLNSISYQVGRTGSITPVANLQPVQLAGTIVKRASLHNADQIE
KLDIRIGDTVFVEKGGEIIPKIIGVDLAKRNPESERTQYISHCPECNSELIRTEGEANHY
CPNFYGCPPQIIGRIQHFISRKAMDIEGLGGETVALLFNNNLVKDYADLYELTVEQILPL
ERMAQKSAENLVNGVQKSKEIPFERVLYAIGIRYVGETVAKKLAKHYKNIDALQNASLMD
LILVDEIGEKIAQSVIEFFENQENVKIIERLKEFGVQLELVEKFNPNATDKLAGKTFVVS
GVFEKFSRDDLKKAIEDNGGKVGSSISAKTDYVVAGENMGPAKLEKANQLKIAIISENDF
LTMITD
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatattcagaaaacaattcaggatttacgtgacgaactcaatcaacacaaccacaat
tattatgtgttagatacgccaacgatttctgatttcgaatttgaccaaaaactaaaacaa
cttcaggaattagaaaatcaacatcccgaattctatgacgataattcaccaactcaacgc
gttggcggaaccattaccaaaaatttcaatacagttgttcacgattaccgaatgtattct
ctcgacaattcgtattccaaagaagatttaatcgattgggaaacccgaatccaaaaagtg
cttggaaatgttccgttgcaatatacctgtgaattaaaatatgatggtgcatcgatttct
ataacctatgaaaacggaaaattaaaacgggcagttactcgtggcgatggttttcagggt
gatgatgtgactaataatattaaaaccataaaatccattccattaaaattaaaaggagaa
tatccggcgcgatttgatattcgtggtgaaatcattttgccttttgaaggttttgaaaaa
atgaatcaggaattgattgaaataggagaaacaccttattctaatccaagaaatacagct
tcaggaagtttgaaattacaggatagtactgaagtagcaaaacgtccattggaatgctta
ctctattttattgtgggcaataatttaaatttcgattctcaatttgacggattagaaact
gctcgtaagtggggttttaaagttcccaaagaagccaaattagctaacactattgaagaa
gtttttgaatacataaattattgggatacgcatcgtcaccatttaccatatgaaacagat
ggtgttgtgataaaagtcaataacctgcaccaacaagatgaattgggttatacagccaaa
tctcctcgttgggcaatggcttataaattcaaagcggaacaagtttcaactacgttaaat
tcaatttcgtatcaggttggaagaaccggttcgataactccggtagccaatttacaacca
gtgcagttggccggaactatcgtaaaacgggcatctttgcacaatgctgatcaaatcgaa
aaattagatatccgcattggtgatactgtttttgttgaaaaaggaggcgaaattattccg
aagataatcggtgttgatttggcaaaaagaaatccggaatcagaacgtactcaatatatt
tctcattgtcctgaatgcaattcggaactgataagaaccgaaggcgaagccaatcactat
tgtccgaatttttatggttgtcctccacaaattataggcagaattcagcattttatttcg
cgtaaagcgatggatattgaaggtcttggcggagaaactgtggctttgcttttcaataat
aatctggttaaagattacgctgatttatacgagttaactgttgaacaaattttgccatta
gagcgaatggcgcaaaaatcggctgaaaacctggttaatggtgttcagaaatctaaggaa
attccgtttgaaagagttttgtatgcgattggaattcgatatgtcggagaaaccgttgca
aagaaactagcaaagcattacaagaatattgatgcattgcaaaatgcgtcgttaatggat
ttgattttggtagatgaaataggagagaagatagcccaaagcgtaatcgagttttttgaa
aatcaggaaaatgtcaaaataatagaacgcttaaaagaatttggagtgcaattagaattg
gttgaaaaatttaatccaaatgctactgataaattagctggtaaaaccttcgtggtttcc
ggagtttttgagaaattctcgcgtgatgatcttaaaaaagcaattgaagataacggcgga
aaagttggaagctctatttctgccaaaacagattatgtggttgcgggagaaaatatgggg
ccagccaaactggaaaaagcgaatcagttaaaaattgctatcatttcagaaaatgatttt
ttaactatgattacggattga
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