Francisella salimarina: KQR59_06935
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Entry
KQR59_06935 CDS
T07516
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsr
Francisella salimarina
Pathway
fsr03030
DNA replication
fsr03410
Base excision repair
fsr03420
Nucleotide excision repair
fsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KQR59_06935 (ligA)
03410 Base excision repair
KQR59_06935 (ligA)
03420 Nucleotide excision repair
KQR59_06935 (ligA)
03430 Mismatch repair
KQR59_06935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsr03032
]
KQR59_06935 (ligA)
03400 DNA repair and recombination proteins [BR:
fsr03400
]
KQR59_06935 (ligA)
Enzymes [BR:
fsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KQR59_06935 (ligA)
DNA replication proteins [BR:
fsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KQR59_06935 (ligA)
DNA repair and recombination proteins [BR:
fsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KQR59_06935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KQR59_06935 (ligA)
MMR (mismatch excision repair)
DNA ligase
KQR59_06935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KQR59_06935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
RNA_ligase
Rnk_N
HHH
Motif
Other DBs
NCBI-ProteinID:
QWV00249
UniProt:
A0AAJ4NQD8
LinkDB
All DBs
Position
complement(1400455..1402491)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISTDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDRLFRLLQDL
VDDDPELKPSNSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTLNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRRPDAQMVEMPTNCPV
CDSAIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAIDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGAKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGNLESFREAKFEQLIEINDIGEIIAKNIVSFWQDSLNAQIVDELLGNSISIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTK
AQQLGVEVILEEGLAGLI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatttctacagactataaaactttaactaaagcacaattaaag
tcatatattgatgatcttgcagagtatctaggcgaacaaagctatttgtatcatactata
gataagccagttattactgactcagactatgataggttattccgattattacaagattta
gttgatgatgatccggagcttaagccatcaaactcagtattagatcgtgttggaggagat
gttttagcaggatttgaaactatcaagcataagaagaaaatgacatctctggcaaatgtt
tttagtctagaggagttgcgtgatttttatgacaaaatagagtatgacattgagcttgaa
tgtgaacctaaaatggatggcttggctattagtatcttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtctctgaaaatgtcaaaacc
atccgcaatgtcccactcaaactaaatactttaaatcctccagaggaactagaagttcgt
ggtgagattatcctagataagcaaagttttctatctcttaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcgaagcgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacctattacaaagctttggc
tttactatcagtgataatatgtttttggcaaaaaacttctcagaagttgaagtgtatcac
cataagatgagtcatcagcgtgcagatttagcttatgatattgatggcttagtttttaag
gtcaataacattaaactacaagatactattggctacactgctagaggacctaagtgggct
atagcatataagtttccagctgaagaggttgagtcagaagtgctaaatgtagagtttcaa
gtcggtagaacaggagcaattaccccagttgcaagacttaagccagttgcagttggtggt
gtaatagtttcaaatgcaactttgcataatatcaatgaaattaaacgcaaagatatccga
gtcggtgatagagtcattgtacgtagggcaggggatgtaattccagaagtggtcaaaagc
ttaccacaatatcgtaggcctgatgcacagatggttgagatgccaacaaattgtccagtt
tgtgattcagcaattgagaatatcaacgatcaggctatatatcgttgtacaggagggtgg
cattgtcaggctcaaactactgagcgcttgaagcactttgtctctcgtaaagcaatagat
attgataagcttggagctaaactgattgagcaacttgttgctgcagatttgatcaagtat
ccagctgatatttataagctcaattttgagcaattgacaggcttagaaagaatgggtgct
aaatcatcgcaaaatgttttagactctattacaaaaagtaaagagccaagcttagcaaga
tttatttttgcaatagggattaaagatgttggtgaagtgtcatcagaagctttagccaat
cattttggtaatttagaaagcttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattttggcaagattccctaaatgca
caaattgttgatgaactattaggtaattctattagtatccaaaatccagaaaaaattgag
caagcacataatgagagttttacaaataaaacaattgtgattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaacggatatggttatttgtggtgataatgctggaagtaagcttaccaaa
gcacaacaattaggtgttgaagttattttagaagaagggttagcaggtttaatatag
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integrated database retrieval system
