Fibrobacter succinogenes: Fisuc_0127
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Entry
Fisuc_0127 CDS
T01099
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsu
Fibrobacter succinogenes
Pathway
fsu03030
DNA replication
fsu03410
Base excision repair
fsu03420
Nucleotide excision repair
fsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fisuc_0127
03410 Base excision repair
Fisuc_0127
03420 Nucleotide excision repair
Fisuc_0127
03430 Mismatch repair
Fisuc_0127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsu03032
]
Fisuc_0127
03400 DNA repair and recombination proteins [BR:
fsu03400
]
Fisuc_0127
Enzymes [BR:
fsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fisuc_0127
DNA replication proteins [BR:
fsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fisuc_0127
DNA repair and recombination proteins [BR:
fsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fisuc_0127
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fisuc_0127
MMR (mismatch excision repair)
DNA ligase
Fisuc_0127
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fisuc_0127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
RNA_ligase
RUBY_RBDX
HMBD
Motif
Other DBs
NCBI-ProteinID:
ACX73741
UniProt:
C9RJM8
LinkDB
All DBs
Position
139686..141833
Genome browser
AA seq
715 aa
AA seq
DB search
MSEQKDIDRTRYFELKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELRGKG
SLTQKVGSDLTNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKKWIC
ERKIDGVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPSEIP
QGTFEVRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMRFFA
YHIPQSNNKTHEENLKQLKRLGFHTNDYWTADTVDEIMAISEKIGASRDSLPFDIDGMVV
KLNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVANLAPVRLA
GTTVKRATLHNFDEVARLDLHYGDTVGVEKGGEIIPKITDVKRELRPAGASPVVAPEKCP
VCGEQLTHIDGEVILRCENLHCKAQVQCLFEHFVSREAMNIENLGPALIASLLATGKIKR
IPDLYRLTLEDLESQERMAKKSAKNVFDAIQASKQRSLENLLHGLGIRFVGRTSARNIAK
HFRTLEKIRTATVEELQNVTDVGERIGKSVYEFFHTPLYTNEIDELVALGLPTEFKGVVK
TLFQGQTAVITGTLPNMDRDEARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANEL
GIPVHDEAWLMAQIANADESGDAPDENAGSSAGNFANEKASVSATPAEDQMSLNL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagcagaaagatattgaccgtacccgctattttgaattaaagaaacaactggaa
gaagctagccgtctttattacaaggacggggtctcccccatgagcgaccaggattttgac
tttgggctcaaggagatggaagcgctcgaggcgaagtatccggaattgcgcggaaaaggt
tcgctcacacagaaggtcggtagcgacctcacgaatgattttgcgaaggtggcacatgcg
gtgccgatgctcagcattgcaaacgtgtacagcgaagaagaaatgcgcgaatttgtgaag
gccgcagaagaaggtctctcgtctttcgtctctcgtctctcgtctaaaaaatggatttgc
gagaggaaaatcgacggagttagcctttcggtgatttacgagaatggccgcttgaagcag
gcggcaacgcgtggcgatggcgcccaaggcgatgacgtgacgttgaatgcgctcacgatt
gcagacattcctgaatattttgacgcgaagaaattgaagattgacccgagcgagattccg
cagggtacgttcgaagtccgcggtgaagtctacatggaacgcgaagcatttgaacgtttg
aacgagcagttcatcctggaaaacaagaagacgttccaaaactgccgcaacacggtttcg
ggctcgctcaagctcaagagcgttgccgaatgcaagacgcgcccgatgcgcttttttgca
taccacattccgcagagcaacaacaaaactcacgaagagaacttgaagcagctcaagcgt
ctcggtttccatacgaacgattactggaccgccgatacggtcgatgaaatcatggcgatt
tccgaaaagataggcgcaagccgcgacagtctcccgttcgatattgacggcatggtcgtg
aagctgaacgatttgcagcagcagcgagaactcggcagcacaagcaagagcccgcgctgg
gccatcgcttacaagttcaaggcggaacgtgcctacacaccgcttttgtctgtagaattc
caggtcggtcgcaccggtgccgtgacgccagtggcaaatctcgcacccgtgcgcctcgca
ggtacaaccgtcaagcgcgccaccctccacaacttcgacgaagtggcaaggctcgacttg
cactacggcgacaccgtcggcgtagagaagggtggcgaaatcatcccaaaaatcacggat
gtcaaacgcgaactgcgccctgccggagcctcccccgtcgtggcacccgaaaaatgcccc
gtgtgcggcgagcaactcacgcacatcgacggcgaagtgattctgcgttgcgaaaacttg
cactgcaaggcgcaagtgcaatgtctgttcgaacatttcgtaagccgcgaagcgatgaac
atcgaaaatctcgggccagcgcttatcgcaagtctccttgccaccggcaaaatcaagcgc
atcccagacctttaccgcctcacgctcgaagacctggaatcgcaggaacgcatggcgaag
aagagcgcgaaaaacgtctttgacgccatccaagcatcaaaacagcgcagtctcgaaaat
ctgttgcacggtctcggcatccgctttgtcggccgcaccagtgcccgtaacatcgcgaag
catttccgcacgctcgaaaaaatccgcacggcaacggtcgaagaattgcagaacgtgacc
gacgtgggtgaacgcatcggcaaatccgtctacgaattcttccacacgccgctttatacc
aatgaaattgatgaactcgtggcgctcggactcccgacggaattcaagggcgttgtcaag
actttattccaaggtcaaactgcagtcatcacaggaacgctcccgaacatggaccgcgat
gaagcgcgcaagctcatcgaagagaatggcggcaaggtttccggttccgtcagtaaaaag
acgagttgggttttggcaggagaagcggcaggttccaagctcaccaaggcaaacgagctc
gggattcccgtacacgacgaagcatggcttatggctcagattgcaaacgccgatgaatcc
ggcgacgccccagacgaaaatgcgggcagttccgcaggcaattttgcaaacgaaaaagca
agcgtttcagcaacgcccgcagaagatcaaatgtcgctaaatctctag
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