Candidatus Protofrankia datiscae: FsymDg_3774
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Entry
FsymDg_3774 CDS
T01530
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fsy
Candidatus Protofrankia datiscae
Pathway
fsy03030
DNA replication
fsy03410
Base excision repair
fsy03420
Nucleotide excision repair
fsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FsymDg_3774
03410 Base excision repair
FsymDg_3774
03420 Nucleotide excision repair
FsymDg_3774
03430 Mismatch repair
FsymDg_3774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsy03032
]
FsymDg_3774
03400 DNA repair and recombination proteins [BR:
fsy03400
]
FsymDg_3774
Enzymes [BR:
fsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FsymDg_3774
DNA replication proteins [BR:
fsy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FsymDg_3774
DNA repair and recombination proteins [BR:
fsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FsymDg_3774
NER (nucleotide excision repair)
GGR (global genome repair) factors
FsymDg_3774
MMR (mismatch excision repair)
DNA ligase
FsymDg_3774
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FsymDg_3774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
Auto_anti-p27
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AEH11051
UniProt:
F8B529
LinkDB
All DBs
Position
complement(4424228..4426369)
Genome browser
AA seq
713 aa
AA seq
DB search
MSPLDTSSPDAPADAADASAVDEIPAQARARAAELARELGEHAFRYYVLDSPTVSDAEYD
QLMAELTQLETRYPGLRTPDSPTQKVAGTISTLFTPVEHLERLLSLDNVFTEVEFEAWAA
RVTREAEVDAWLCELKIDGLAVDLVYEDGYLARAATRGDGRTGEDVTPNIRTLAAVPGRL
RGGSVPELLEVRGEVFFPTAAFTELNATLVAAGDKPFANPRNAAAGSLRQKDPRVTAGRP
LSMIMHGLGAHRGFDVTSQSDAYQRMAELGLPVSRHHEVLASVAEVEAFVRRWGEHRHDV
EHEIDGVVVKVDAFGLQRRLGATSKSPRWAVAYKYPPEEVTTRLLGIEVNVGRTGRVTPF
GRLEPVRVAGSTVALATLHNADQVERKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSER
AFVMPTHCPECGTELVRPEGEVDVRCPNTVSCPAQLRESLFHFASRGALDIDGFGYETAT
ALLEAGRVRDVGDVFHLTAESFAELRGFAKKKIDQILRGVEAARQQPLWRLLVGLSIRHV
GPSAARALAREMRSVDAIAAASTETLAAVDGVGPTIAASVVDWFADPRHQDILERIRSGG
ARFADAGADDGPGPLTGVTVVITGTLAGWSRDSATEAVQARGGKVTASVSKKTAFVVVGA
DPGASKYDKARAWKLSILDEAGFAVLLEQGPQAATPLALPPEPDDGPPQPADG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgctcgacacctccagcccggacgcccccgcggacgcggccgacgcgtcggcg
gtcgacgagatcccggcacaggcgcgggcgcgggcggcggagctggcccgggagctgggc
gaacacgccttccgctactacgtcctggattccccgaccgtctccgacgccgagtacgac
cagctcatggccgagctgacgcagctcgagacccgctatccgggtctgcgcacgccggac
tcgccgacccagaaggtcgccggcaccatctcgacgctgttcaccccggtggagcacctg
gagcggctgctctcgctggacaacgtcttcacggaggtggagttcgaggcgtgggccgcc
cgcgtcacccgggaggccgaggtggacgcctggctgtgcgagctgaagatcgatggtctc
gcggtcgacctggtctacgaggacggctacctggcgcgcgcggccacccgcggcgacggg
cggacgggagaggacgtcaccccgaacatccggaccctcgcggcggtgccgggccggctg
cgcggtgggagcgtgcccgagctgctggaggtccgcggcgaggtcttcttcccgacggcg
gccttcaccgaactcaacgccacgctggtcgccgctggcgacaaaccgttcgccaacccg
cgcaacgccgccgccggctccctgcggcagaaggacccgcgggtcaccgccggccgccca
ctgtccatgatcatgcatggactcggtgcccaccgcggcttcgacgtcacctcccagtcc
gatgcgtaccagcggatggccgagctcggcctgccggtctcccggcaccacgaggtgctg
gcgagcgtcgccgaggtcgaggcattcgtccgccggtggggggagcaccgccacgacgtc
gagcacgagatcgacggtgtggtggtgaaggtcgacgccttcggcctgcaacgccgcctc
ggcgccacgtcgaagtccccgcgctgggcggtggcctacaagtacccgcccgaggaggtc
accaccaggctgctgggcatcgaggtcaacgtgggccgcacggggcgggtcaccccgttc
ggccgcctggagccggtcagggtcgccggctccaccgtcgccctggccaccctgcacaac
gccgaccaggtcgaacgcaagggcgtgctgatcggcgacaccgtcgtcctgcgcaaggcc
ggggacgtgatcccggagatcgtcggcccggtcgtggacctgcgggacggttccgaacgc
gccttcgtgatgcccacccactgcccggagtgcggcaccgagctggtgcgtcccgagggc
gaggtcgacgtccgctgcccgaacaccgtctcgtgcccggcgcaactgcgcgagtcgctg
ttccacttcgcctctcgcggcgccctggacatcgacggcttcggctacgagacggcgacc
gccctgctggaggccggccgggtacgcgacgtcggcgacgtcttccacctcaccgccgag
tcgttcgccgagttgcgcggcttcgccaagaagaagatcgaccagattctgcgcggggtg
gaagcggcccggcagcagccgctgtggcggctgctggtcgggctgtccatccggcacgtg
ggcccgagcgcggcccgagcactggcccgcgagatgcgctcggtggacgccatcgccgcc
gcgtccaccgagacgctggccgccgtcgacggcgtgggtccgaccatcgccgcctccgtg
gtggactggttcgccgacccgcgccaccaggacatcctggaacggatccgttccggtggg
gcgcggttcgccgacgccggcgcggacgacgggcccggcccgctcaccggcgtcaccgtc
gtgatcaccgggacgctggcgggctggagccgggactccgccaccgaggccgtccaggcc
cgcggcggcaaggtcaccgcctcggtgagcaagaagacggccttcgtggtggtcggcgcc
gacccgggggcgagcaagtacgacaaggcccgcgcctggaagctgtcgatcctcgacgag
gccggcttcgccgtcctgctggagcaggggccgcaggccgcaaccccgctcgcgctcccg
ccggaaccggacgacggcccaccgcaaccagccgacgggtag
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