Francisella tularensis subsp. novicida F6168: AS84_1163
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Entry
AS84_1163 CDS
T03873
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ftd
Francisella tularensis subsp. novicida F6168
Pathway
ftd03030
DNA replication
ftd03410
Base excision repair
ftd03420
Nucleotide excision repair
ftd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ftd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AS84_1163 (ligA)
03410 Base excision repair
AS84_1163 (ligA)
03420 Nucleotide excision repair
AS84_1163 (ligA)
03430 Mismatch repair
AS84_1163 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ftd03032
]
AS84_1163 (ligA)
03400 DNA repair and recombination proteins [BR:
ftd03400
]
AS84_1163 (ligA)
Enzymes [BR:
ftd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AS84_1163 (ligA)
DNA replication proteins [BR:
ftd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AS84_1163 (ligA)
DNA repair and recombination proteins [BR:
ftd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AS84_1163 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AS84_1163 (ligA)
MMR (mismatch excision repair)
DNA ligase
AS84_1163 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AS84_1163 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJI44605
LinkDB
All DBs
Position
1208929..1210965
Genome browser
AA seq
678 aa
AA seq
DB search
MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL
VNDNPQFKPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQVVEMPTSCPV
CDSAIENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAANLIKY
PADIYKLNFDQLTGLERMGAKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGSLESFREAKFEQLIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVE
HAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTK
AQELGVEVILEDNLKDLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccaaacgaatttttttctataaaatatcatattttagctaaagcagaattaaaa
gcttacatagacaaattagctgattatcttagtcaacagagctatttgtatcatacctta
gataagccaattatttctgactctgattatgataagctgtttagattacttcaagattta
gttaatgacaatcctcaatttaagccgataaattcagtattagatcgtgttggaggtgag
gttttagcagggtttgaaactatcaaacataagaagaaaatgacatctctggcaaatgtc
tttagtctagaggagttgcgtgatttttatgacaagatagagtatgacattgagcttgaa
tgtgaacctaaaatggatggtctagcaatcagcattttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtttcagaaaatgtcaaaact
atccgtaatgtcccacttaaactaaatacttcaaaccctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctctcaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgaaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagcgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgaacttatgaacctattacaaagctttggc
tttacaattagtgataatatgtttttggcaaaaaatttctcagaggttgaggagtatcac
cataagatgagtcatcagcgtgctgatttagcttatgatattgatggcttagtttttaaa
gttaataacattaaactacaagatattattggctacactgctagagggcctaagtgggct
gtagcgtataagttcccagctgaagaggtggaatcagaagtgttaaatgtagaattccaa
gttggtagaacaggagcaattacaccagttgcaagacttaagccagtagcagttggcggc
gtaatagtttcaaatgcaaccttacataatatcaatgaaattaaacgcaaagatatccga
gttagcgatagggtgatagtacgtagagcaggagatgtcatccctgaagttgttaaaagt
ttgccacagtatcgtaagcctgatgcacaggttgttgagatgccaacaagttgtccagtt
tgtgattcagcaattgagaatgttaacgatcaggctatatatcgttgtacaggaggatgg
cattgtcaggcgcaaacgacagagcgtttgaaacattttgtttcacgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcaaatttaattaagtat
ccagccgatatttacaagctcaattttgatcaattgacaggcttggaaagaatgggtgct
aaatcatcgcaaaatgttttagactctatcacaaaaagtaaagagccaagtttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtgtcatcagaagctttagccaat
cattttggtagtttagaaagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgagattatggctaataatattgtttcattttggcatgattctctaaatatt
aagattgtagaagagcttttagctattgggattaagatacaaaatccagtaaaagttgaa
cacgcctataacgagagcttcacaggtaaaactgttgttattactgggtcttttgagaac
tatggtcgtacagaacttacacagcttcttaagtcaatcggggcaaaagttacctcaagt
gtttctaaaaaaactgacatggttatttgtggcgataatgctggtagcaaacttacaaaa
gctcaagaattaggtgtagaagttattcttgaagataatctgaaagatttattatga
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