Fluviicola taffensis: Fluta_0044
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Entry
Fluta_0044 CDS
T01455
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fte
Fluviicola taffensis
Pathway
fte03030
DNA replication
fte03410
Base excision repair
fte03420
Nucleotide excision repair
fte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fluta_0044
03410 Base excision repair
Fluta_0044
03420 Nucleotide excision repair
Fluta_0044
03430 Mismatch repair
Fluta_0044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fte03032
]
Fluta_0044
03400 DNA repair and recombination proteins [BR:
fte03400
]
Fluta_0044
Enzymes [BR:
fte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fluta_0044
DNA replication proteins [BR:
fte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fluta_0044
DNA repair and recombination proteins [BR:
fte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fluta_0044
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fluta_0044
MMR (mismatch excision repair)
DNA ligase
Fluta_0044
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fluta_0044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_ligase
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
AEA42054
UniProt:
F2IAB9
LinkDB
All DBs
Position
complement(42201..44213)
Genome browser
AA seq
670 aa
AA seq
DB search
MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDLSP
TKRVGGDITKKFATVVHKFPMLSLSNSYSEEEIIEWEQRLKKLATGPIEYVCELKYDGVA
IGIRYVNGKFARAVTRGDGTKGEDISANVKTIRTIPLTLKGDYPDDFEIRGEIFFPKANF
EAMNRQREELGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGVYGDDLLMESHLESI
QKAQEWGFKTPQEKNKYILNTFSIEGIMEFIHYWDKERYNLPFEIDGIVIKVNNYDQQAD
LGFTAKSPRWAIAYKFKAERVSTTLKEVTYQVGRTGAITPVANLIPVLLGGTVVKRASLH
NADQIEKLDLYLEDSVYVEKGGEIIPKIVGVQTDSRPVNAEKVIFIERCPECNSELQRRE
GEVQHYCLNDLVCPPQVKGRMEHFISRKAMNIDGLGAETIDLLYKEGLADSIADLYDLTF
DQVVNLERMADKSANNLIIGIRNSKEIPFERVLFALGIRFVGETVAKKLAYAFNNIDAIS
KATYDELIAVDEIGEKIAIAVQKFFQDERAIQIIERLKIAGVQFEVEEVALDSNSLEGKS
FVVSGVFSKFSRDEIKDLIEKNGGKNVGSISAKTTYVLAGENMGPAKLEKASSLGIPIIS
EEDFIQMLSS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtctgaagcacaacttaaaatagaacaattaacgaaagagttaactcttcac
aatcacaactattatgtggaaagcaatccaacgatttctgattatgaattcgatgtgctt
ctgaaagaattgcaggatttggaaactcaatttccagaattagcttcagatttaagtcct
acaaaacgagttggtggtgatatcactaaaaaattcgcaacggtggttcacaaattcccg
atgctttctttatcaaattcctattcggaggaggaaattatcgaatgggaacaacgcttg
aaaaaactagcaactggaccgattgaatacgtatgcgaattgaaatacgatggagttgcc
attggaattcgctatgtgaatggaaagtttgcacgggcagtaacacgtggcgatggaaca
aaaggagaagatatttcggcaaatgtgaaaacaatccgaacgattcctctgacgctgaaa
ggcgattatccagatgattttgaaattcgaggtgagatctttttcccaaaagcaaatttc
gaagcaatgaaccgacaacgcgaagaattaggagaacccgtttttgcaaatccgcgtaat
tctgcttctggaactttgaaatctcaagattctaaagtcgttgcagaaagaggtttagat
tgttttttatacggagtttatggggatgatttgttgatggaatctcatttggaaagcatt
caaaaagcacaagaatggggattcaaaactccacaggagaagaataaatacattttaaat
actttttccattgaaggaatcatggagttcattcattactgggataaggaacgctataat
ttgccttttgaaattgatggaatcgttataaaagtcaataattacgatcaacaagcggat
ttaggattcactgcgaagtctccacgatgggcaattgcatacaaatttaaagctgagcgc
gtatcgacaaccttgaaagaagtcacatatcaagttggtagaacaggtgcaattactcca
gtcgcaaatttaattccagttcttttgggaggaactgttgttaagcgagcatctttacat
aatgctgatcaaattgaaaaactggatttgtacttggaggattctgtttatgtcgaaaag
ggaggtgaaattattccaaagatagttggtgtccaaaccgattctcgtccagtaaatgca
gagaaggtaattttcattgaacgttgtccagaatgtaattctgaattgcaacgaagagag
ggtgaagtacaacactattgtttgaatgatttggtttgtccaccgcaagtaaaaggtcgg
atggagcattttatttctcgaaaagctatgaatattgatggtttgggagcggaaacaatt
gatttgttatacaaagaaggtttagcagatagtatcgccgatttatacgatctgaccttt
gatcaggtggtgaacttagagcgcatggctgataaatctgcgaataatttgattattgga
attcggaattcgaaagagattccgttcgagcgggtattgttcgcactaggaattcgcttt
gtgggtgaaaccgtcgcgaagaaattggcttatgcatttaacaatattgatgctatttca
aaagcaacttacgatgagttaattgctgtggatgagattggagagaaaattgccattgct
gtccaaaaattctttcaagacgagcgcgctattcaaattatcgagcgattaaaaattgct
ggagttcaatttgaagtagaagaagtcgctcttgactcgaattcattggaaggaaaatcg
ttcgttgtttctggcgttttctccaaattcagcagagacgagatcaaagacttgattgaa
aagaacggaggaaagaatgtgggatctatttctgcaaaaacgacgtacgttttggctgga
gaaaatatgggacccgcgaaattggaaaaagcgagttctttgggaattcctattatttca
gaggaagattttattcaaatgctctcaagctag
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