Fervidobacterium thailandense: U0O82_03800
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Entry
U0O82_03800 CDS
T11134
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fthl Fervidobacterium thailandense
Pathway
fthl03030
DNA replication
fthl03410
Base excision repair
fthl03420
Nucleotide excision repair
fthl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fthl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0O82_03800 (ligA)
03410 Base excision repair
U0O82_03800 (ligA)
03420 Nucleotide excision repair
U0O82_03800 (ligA)
03430 Mismatch repair
U0O82_03800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fthl03032
]
U0O82_03800 (ligA)
03400 DNA repair and recombination proteins [BR:
fthl03400
]
U0O82_03800 (ligA)
Enzymes [BR:
fthl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U0O82_03800 (ligA)
DNA replication proteins [BR:
fthl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0O82_03800 (ligA)
DNA repair and recombination proteins [BR:
fthl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U0O82_03800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0O82_03800 (ligA)
MMR (mismatch excision repair)
DNA ligase
U0O82_03800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0O82_03800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XEY14846
LinkDB
All DBs
Position
786325..788334
Genome browser
AA seq
669 aa
AA seq
DB search
MVPEKIRQEVEKLRKEIEYHNYRYYVLVSPIISDEEYDRLMKRLIELEEKYPELRTPDSP
TQRVGGAPVEGFETVEHSEPMLSLDNTYSEEEIRNFDARVKRTVGTVEYVAELKIDGVSI
ALRYEKGMLVRAITRGDGLKGDDVTVNVKTIKSIPLRLPREIDLEVRGEIYMPVQYFEEL
NQQREEEGLTPFANPRNATAGTLHLLDPREVAKRNLDSFIYYVVKPESFGLKTQWEALEF
LKELHFKVNPHNALCKNVDEVVEYWREWSRRRHELDYWVDGVVVKVNDFEKQRELGATAK
SPRWAIAFKFPAQQARTKVLNVVLQVGRTGVITPVAEFEPVELEGTTVKRASLHNFDYIE
ELDLRIGDYVFIEKAGGIIPQVVQVLKELRDGDEVIVRPPDRCPVCGGVVGKESGEYVAY
KCLNPHCPAKLKRHLEVFVSRQALDIQGLGSKIISKLVDAQLVKDIADLFYLTVFDLAQV
SGVGPKMISNILSEIERAKNVELDRLILGLGIPGVGEKTAKVLAQKFGSLERLSEASVDQ
LLEIEGIGEELARNVYEYFRNPKTREIIEKLKKAGVQLGKVTAPEQNVLNGLTFCVTGTL
KRFSREEIKRLIEKLGGHFTDSVTRKTDYLIVGSEPGSKLEKARKFGVKCMTEEEFLNML
REKGVENLG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtggtacccgagaagatcagacaagaagtggagaagcttagaaaggaaattgagtaccac
aattacaggtactacgtccttgttagtccaataattagcgatgaagagtacgatcgcctg
atgaaaaggttgattgaattggaggaaaagtacccggagctgagaactccggactcacct
acacaacgtgtcggtggtgcacccgttgagggtttcgaaaccgtcgagcactccgagccg
atgctcagtttggacaacacctacagtgaggaagaaattagaaacttcgatgcgcgtgtg
aaacgcaccgtcggaacggtggaatacgttgccgaactgaagatagacggtgtttcgata
gccctgaggtacgaaaaggggatgctcgttcgtgctattacacgcggcgatggcttgaaa
ggcgatgatgtcacggttaacgtgaagacgataaagtccattcctttgagactaccaagg
gagatagacctggaggtacgtggcgaaatctacatgccggtccagtactttgaggagtta
aaccaacagcgcgaagaggaaggattaacaccgtttgcgaacccgcgaaatgcaacggct
ggaacactccatttactcgaccccagggaagttgcgaagaggaatttggattctttcata
tattacgtcgtaaaacccgaaagctttgggctgaagacgcagtgggaagccctggaattt
ctcaaagaactgcacttcaaagtgaatccgcataatgcactttgtaagaatgtcgatgaa
gtggttgagtactggagggagtggagtcgtcggcggcacgagctcgactactgggttgac
ggtgttgtggtcaaggtgaacgattttgaaaaacagcgcgaactcggtgcaactgcaaag
tccccgcgctgggccatcgcattcaagttcccggcccagcaggcgaggacgaaagtgctc
aacgtggtgttgcaggttggaaggaccggggttatcacaccggttgcggagttcgaacct
gtggagctcgaaggaacgacggtgaaacgtgcaagcttgcacaacttcgattacatagag
gaactcgacctgcggattggtgattacgttttcatcgagaaggcgggaggtatcataccg
caggttgtccaagttttgaaggaactacgcgacggtgatgaagtgattgtcaggcctccc
gaccgatgtcccgtttgcggtggtgtggttggcaaagagtcaggggagtacgtggcctac
aaatgtttaaacccgcactgtccagcgaagctcaagcgtcatttggaggtctttgtctcg
cgccaagcgcttgacatccaaggcttgggatctaagatcatctccaagctcgtcgacgct
cagcttgtaaaggatattgcggacttgttttacctcaccgttttcgaccttgctcaggtg
agcggtgtgggtccgaagatgatatcgaacatcctttcagaaatcgagcgagcaaagaac
gttgaacttgatagactcatcttgggactcggtataccgggtgttggggagaagacggcc
aaggtgctcgcacaaaaattcgggagtttggagagactctcggaagcttcggtagaccag
ctccttgaaattgagggaataggtgaggaacttgcaaggaatgtgtacgagtacttcaga
aatccgaagacacgcgagataattgaaaaactcaaaaaagccggggtgcaactcggtaag
gttacggctccggaacaaaacgtactcaacggactaacgttctgtgtgaccggtaccttg
aaaaggttctcgcgcgaggaaataaaaaggctgatagaaaaactcgggggccacttcacc
gacagcgtaaccaggaagaccgattacctcatcgtaggttccgaaccaggtagtaaactg
gaaaaagcacgtaagttcggtgtgaagtgcatgacagaagaagaatttttgaacatgctc
cgggaaaagggagtagagaaccttgggtga
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