Francisella tularensis subsp. novicida U112: AW25_653
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Entry
AW25_653 CDS
T03874
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ftx
Francisella tularensis subsp. novicida U112
Pathway
ftx03030
DNA replication
ftx03410
Base excision repair
ftx03420
Nucleotide excision repair
ftx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ftx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AW25_653 (ligA)
03410 Base excision repair
AW25_653 (ligA)
03420 Nucleotide excision repair
AW25_653 (ligA)
03430 Mismatch repair
AW25_653 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ftx03032
]
AW25_653 (ligA)
03400 DNA repair and recombination proteins [BR:
ftx03400
]
AW25_653 (ligA)
Enzymes [BR:
ftx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AW25_653 (ligA)
DNA replication proteins [BR:
ftx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AW25_653 (ligA)
DNA repair and recombination proteins [BR:
ftx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AW25_653 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AW25_653 (ligA)
MMR (mismatch excision repair)
DNA ligase
AW25_653 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AW25_653 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJI61060
UniProt:
A0Q7L0
LinkDB
All DBs
Position
700332..702368
Genome browser
AA seq
678 aa
AA seq
DB search
MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL
VNDNPQFKPINSVLDRVGGEVLAEFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPV
CDSAIENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAANLIKY
PADIYKLNFDQLTGLERMGAKSSQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLAN
HFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVE
HAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTK
AQELGVEVILEDNLKDLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccaaacgaatttttttctataaaatatcatattttagctaaagcagaattaaaa
gcttacatagacaaattagctgattatcttagtcaacagagctatttgtatcatacctta
gataagccaattatttctgactctgattatgataagctgtttagattacttcaagattta
gttaatgacaatccccaatttaagccgataaattcagtattagatcgtgttggaggtgag
gttttagcagagtttgaaactatcaagcataagaagaaaatgacatctctggcaaatgtc
tttagtctagaggagttgcgtgatttttatgacaagatagagtatgacattgagcttgaa
tgtgaacctaaaatggatggtctagcaatcagcattttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtttcagaaaatgtcaaaact
atccgcaatgtcccacttaaactaaatacttcaaaccctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctctcaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgaaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaaacgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaacccaatttgaactaatgcagctactccaaagttttggc
tttacaattagtgataatatgtttttggcaaaaaatttctcagaggttgaggagtatcac
cataagatgagtcatcagcgtgctgatttagcttatgatattgatggcttagtttttaag
gttaataacattaaactacaagatattattggctacactgctagagggcctaagtgggct
gtagcgtataagttcccagctgaagaggtggagtcagaagtgttaaatgtagaattccaa
gttggcagaacaggagcaattacgccagtagcaagacttaagccagtcgcagttggcggc
gtaatagtttcaaatgcaaccttgcacaatatcaatgaaattaaacgcaaagatatccga
gttggtgatagagtaatcgtacgtagagcaggggatgtaattccagaagtggtcaaaagc
ttaccacaatatcgtaagtctgatgcacagatggttgaaatgccaacaaattgtccagtt
tgtgattcagcaattgagaatgttaatgatcaggctatatatcgttgtacaggaggatgg
cattgtcaggcgcaaacgacagagcgtttgaaacattttgtttcacgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcaaatttaatcaagtat
ccagccgatatttacaagctcaattttgatcaattgacaggcttagaaagaatgggtgct
aaatcatcacaaaatgttttagactctatcaaaaaaagtaaaactccaagcttagcaagg
tttatttttgctattgggattaaagatatcggtgaagtatcatcagatgttttagcgaat
cattttggtagtctagagagcttccgtgatgctaagtttgaggagctaatagagattaat
gatattggtgagattatggctaataatattgtttcattttggcatgattctctaaatatt
aagattgtagaagagcttttagctattgggattaagatacaaaatccagtaaaagttgaa
cacgcctataacgagagcttcacaggtaaaactgttgttattactgggtcttttgagaac
tatggtcgtacagaacttacacagcttcttaagtcaatcggggcaaaagttacctcaagt
gtttctaaaaaaactgacatggttatttgtggcgataatgctggtagcaaacttacaaaa
gctcaagaattaggtgtagaagttattcttgaagataatctgaaagatttattatga
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