Fusobacterium animalis 4_8: HMPREF0409_01511
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Entry
HMPREF0409_01511 CDS
T02680
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fus
Fusobacterium animalis 4_8
Pathway
fus03030
DNA replication
fus03410
Base excision repair
fus03420
Nucleotide excision repair
fus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0409_01511
03410 Base excision repair
HMPREF0409_01511
03420 Nucleotide excision repair
HMPREF0409_01511
03430 Mismatch repair
HMPREF0409_01511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fus03032
]
HMPREF0409_01511
03400 DNA repair and recombination proteins [BR:
fus03400
]
HMPREF0409_01511
Enzymes [BR:
fus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF0409_01511
DNA replication proteins [BR:
fus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF0409_01511
DNA repair and recombination proteins [BR:
fus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF0409_01511
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0409_01511
MMR (mismatch excision repair)
DNA ligase
HMPREF0409_01511
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0409_01511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
EAD10
UPF0758_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AGM22682
UniProt:
R9RA35
LinkDB
All DBs
Position
complement(236478..238568)
Genome browser
AA seq
696 aa
AA seq
DB search
MEIKKRIEELKNNQTGLTLYSSQELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDM
LLKELESLEEKYPQYKEISSPTTSVGASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIE
RIKKKISKEQELKYCLEVKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEITSIV
KTLPQAMDMEIRGEVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERG
LDAYFYFLVEADKLGFKSHSESIKFLESMRIKTTGIFELLETSKEIEKRIDYWEKERENL
PYETDGLVIKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPV
AELQEVELSGSKVKRASLHNISEIQRKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEK
IIEEPVNCPVCNHKLEREEGLVDIKCVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEK
FIDLGYIKTVVDIYDLKNHRESLENIDKMGKKSIENLLNSIEESKNRDYDKVIYALGIAE
IGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFKKEKNQKIIQGLKEK
GLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDY
LIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaaaaaaagaattgaagaattaaaaaataatcaaacaggacttacactttac
tcatcacaagaattaaatgatttagaaaaaatagttaaattaagagaagatttagataag
tataggaactcttactacaatgacaatataagtctaatttcagactatgaatttgatatg
ttgttaaaagaattagaaagtttagaggaaaaatatccacagtataaagaaatttcttct
ccaaccacatcagtgggagcaagtttaaaagaaaataaatttaagaaagttgaacatata
caccctatgttaagtttagcaaatagttataatattggggaaattgtagactttattgaa
agaataaaaaagaaaatttcaaaagaacaagaattaaaatattgtttagaagttaaactt
gatggcttatctatcagtctaacttacagacaaggaaaacttgttagagctgtaactcgt
ggagatggacttataggagaagatgttacagaaaatattttagagataacaagtatagtt
aaaactttaccacaagctatggatatggaaattagaggagaagttgtactacctttggct
agttttgaaaaattaaacaatgaaagattagaaaaaggggaagagctttttgctaatcct
agaaatgcagcaagtggaactttaagacaattagattctaaaattgtaaaagaaagaggt
ttagatgcctatttttatttcttagttgaagcagacaaattaggttttaaatctcatagt
gaaagtataaaatttttagagtctatgagaataaaaacaacaggaatatttgaactttta
gaaacttcaaaagaaatagaaaaaagaatagattattgggaaaaagaaagagaaaattta
ccttatgaaacggatggtctagtaataaaagttgatgaaataaatttatggaatgaaatt
ggctacacaagtaaaacgcctagatgggcaatagcatataaatttccagcacatcaagtt
tcaactgtgttgaatggtgtaacttggcaagtaggaagaactggaaaactaacacctgtt
gcagagcttcaagaagttgaactatctggaagtaaagtaaaaagagcaagtttacataat
ataagtgagattcaaagaaaagatataagaataggagatagagtctttatagaaaaagct
gctgaaattattccacaagttgtgaaatctataaaagaggacagaacaggaaatgaaaaa
atcatagaagagcctgttaattgtcctgtatgtaatcataaacttgaaagagaagagggc
ttagttgatataaaatgtgtcaatgaagaatgtcctgccaaagttcaaggagagatagaa
tattttgtttcaagagatgctctaaatattatgggcttaggttcaaaaatagttgaaaaa
tttatagatttaggatatataaaaactgttgttgatatttatgatttaaaaaatcataga
gaatccttagaaaatattgataaaatggggaaaaaaagtatagaaaatcttttaaattca
atagaagaaagcaaaaatagagattatgataaagttatctatgctttgggaatagccgaa
attggaaaggttacttctaaaatattagcaaaagcttcaaaaaatattgataaattgatg
actatgacctttgaagaactgacttcaatagatggaattggagaaatagctgctaatgaa
attatagctttctttaaaaaagaaaaaaatcaaaaaattattcaaggtttaaaagaaaaa
ggtttaaaatttgaaataaaagaaagtgaaactaatacacaaaatataaatcctaatttt
gctggaaaaaatttcttattcacagggacattaaaacattttacaagagagcaaataaaa
gaagaaattgaaaaattaggtgggaagaatttaagttcagttagtaaaaatttagattac
ttaatagttggagagaaagcaggaagtaagttaaagaaagcacaagaaattccaactata
aaaatattgactgaggaagagtttatagaactaaaagataaatttgactaa
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