Fusobacterium varium: FV113G1_05100
Help
Entry
FV113G1_05100 CDS
T05280
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fva
Fusobacterium varium
Pathway
fva03030
DNA replication
fva03410
Base excision repair
fva03420
Nucleotide excision repair
fva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FV113G1_05100 (ligA)
03410 Base excision repair
FV113G1_05100 (ligA)
03420 Nucleotide excision repair
FV113G1_05100 (ligA)
03430 Mismatch repair
FV113G1_05100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fva03032
]
FV113G1_05100 (ligA)
03400 DNA repair and recombination proteins [BR:
fva03400
]
FV113G1_05100 (ligA)
Enzymes [BR:
fva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FV113G1_05100 (ligA)
DNA replication proteins [BR:
fva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FV113G1_05100 (ligA)
DNA repair and recombination proteins [BR:
fva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FV113G1_05100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FV113G1_05100 (ligA)
MMR (mismatch excision repair)
DNA ligase
FV113G1_05100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FV113G1_05100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
RNA_pol_A_CTD
UPF0758_N
EAD10
HHH
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BBA50163
LinkDB
All DBs
Position
577325..579391
Genome browser
AA seq
688 aa
AA seq
DB search
MKEMKLNFFEENDMKANKERIEKLRADLLKYNQYYYTNNESLISDVEYDTLMNELKDLEE
KYPEYKSKVSPTVIVGASNLRENKFQKITHKKPMLSLSNTYNEEEIGDFIDRIKKLLPEE
NNIKYALELKLDGLSISVQYEKGKLVRGVTRGDGAIGEDVTENIMEIGTIPHTLKEPLDM
EIRGEIVLPISKFESLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLDCYFYFIV
DAKNYGIQTHSESIKYMESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDYETDGMVI
KVDNLDFWDELGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAELEEVLLS
GSKVKRASLHNFHEIERKDIRIGDKVFIEKAAEIIPQVVKSIKEFRNGSEEMITEPDKCP
VCGSAVAREEGQVDIKCTNPNCPGKIKGRIEYFVSRDAMNIGGFGSKMVEKMLELGFIKN
VGDIYDLKTHKEDLENIEKMGKRSVENLLDSIEASKNRDYSKVVYALGIPFIGKYSGKLL
AEASKNIDNLMKMEIEELMEIDGIGDKGAKAVYDFFRDEENIELINILRGHGLQFAVEEK
EEEDQANQIFSGKTFLFTGTLKNFKREEIKEEIEKLGGKNLAAVSKNLDYLIIGEKAGSK
LKKAQELGTVKILTEEEFIEICKNNNKN
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaatgaaattaaatttttttgaggagaatgatatgaaagcgaataaggagagg
atagagaagctgagagcagatctcttgaagtacaaccaatactactatacaaataatgag
agccttatttctgatgtagaatatgatacattaatgaatgaacttaaagatttagaagaa
aaatatccagaatataaaagtaaagtgtcacctactgttatagtaggggcttcaaatctt
agagagaataagtttcagaaaataacccataaaaaaccgatgctgagcctttccaatact
tataatgaagaggagataggggattttatagatagaataaaaaaacttcttccagaagaa
aataatataaaatatgctcttgaattgaaattagatggtctttctataagtgttcaatat
gaaaaggggaaacttgtaagaggagtaactagaggagatggagcaataggagaagatgtt
acagaaaatattatggaaattggaactattcctcatacattaaaagaaccactagatatg
gaaataaggggagagattgttcttccaataagtaaatttgaaagtttaaatgaaaggaga
atggaagcaggagaagaagtgtttgctaatcctagaaatgctgcaagcggaacacttaga
caaattgatgccagtataataaaagaaagaggtttagactgctatttttattttatagtg
gatgctaaaaattatggaatacaaactcatagtgaaagtataaaatatatggaatcttta
ggaataaagacaacaggggtatgtgaagtattagatacagcctctgctttgaaaaaaaga
atagattattgggaacaggaaaaagaaaaattggattatgagacagatggaatggtaata
aaagtagataatcttgatttctgggatgagcttggaaatactactaaaagtccaagatgg
gctatagcatataaatttcctgcgaagcaggtaacaactactttattaggaataacatgg
caagtaggcagaacaggaaaggttaccccagttgctgaactggaagaggtattattatct
ggaagcaaggtaaaaagagccagtcttcataattttcatgaaatagagagaaaagatata
agaataggagataaggtgtttatagaaaaagctgctgagataataccacaagtagtaaaa
tctataaaagaatttagaaatggcagtgaagaaatgataactgaacctgataaatgtcca
gtatgtggaagtgcagttgcacgggaagaaggacaagtagatataaagtgtaccaatcca
aattgtccaggaaaaataaaaggaagaatagaatactttgtgtcaagagatgctatgaat
ataggtggatttggaagtaaaatggtagaaaaaatgctggagcttggatttataaaaaat
gttggagatatatatgatttaaaaactcataaagaagatcttgaaaatatagaaaaaatg
ggaaaaagaagtgtagaaaatcttctggattcaattgaagcaagtaaaaacagagattat
tcaaaggttgtttatgcacttgggataccttttattggaaaatattctggaaaactttta
gcagaagcaagtaaaaatatagataatttaatgaaaatggaaatagaagaattaatggaa
atagatggtattggtgataaaggggcaaaagctgtatatgatttttttagagatgaagaa
aatattgaacttataaatatattaagaggacatggactgcagtttgctgtggaagaaaaa
gaagaagaggatcaggctaatcaaatattttctggaaaaacttttctttttacaggaaca
cttaaaaattttaaaagggaggaaataaaagaagaaatagaaaaacttggaggaaaaaat
ctagcagcagtgagtaaaaatcttgattatcttataattggagaaaaagctggaagtaaa
ttaaaaaaagctcaggaattaggaactgtaaagattctcacagaggaagaatttatagaa
atatgtaagaataacaataaaaattaa
DBGET
integrated database retrieval system
