Fragaria vesca (woodland strawberry): 101292133
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Entry
101292133 CDS
T02666
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
101292133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101292133
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101292133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
101292133
NCBI-ProteinID:
XP_004302012
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All DBs
Position
LG6:173327..181755
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AA seq
971 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEHPREDPNGVPRPIDVSRPNPNGFEFDNLYLDMNGII
HPCFHPDGRPAPVTYEDVYKSIFDYIDHLFTLVRPRKLLFMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEERLKNEFETEGESLVPKEKRETSDSNVITPGTQFMAVLSVALQYFIQ
SKLNSDRGWRSTKVILSDANVPGEGEHKIMSYIRSQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVITLPSQQEKCFLCGQVGHLAAECRGGDDGANLTPIHQKKYQFLHI
WVLREYLQYELDIPNPPFQLNFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINLLMHI
YRREFSAMGGYLTDAGEVLLDRVERFIQSVAVYERQIFQKRARIQQAFENNEERQRNRRE
SCEELPAPVVEKVVDKVKLGEPGYTERYYAEKFQVSKPEEVETVKKDLVLKYVEGLCWVC
RYYYQGVCSWQWYYPYHYAPFASDLENLDDLEITFFLGEPFKPFDQLMGTLPAASCSALP
EKYRNLMTDPSSPICNFYPSDFEIDMNGKRFAWQGVAKLPFIDEKKLLAQTRKLESTLTE
EELARNSVMLDLLFVYPSHPLASHITLYYQVYCQSPPHVRLPWVIDTSLSGGMNGFLWLS
ERNGFRNVIPSPVRGFPNIDHNQVLNVTYLLPVAQKHIPEPPRGVIMPRKVVKPMDIKPP
PALWHEDNGPRRYQNRDRPQIPGAIAGPMLGEAAHRLVKNTLNLRPSNASSGFWDQPRPL
RTTSGNYIGNYPVNRPRPAGPSGYERGFREEPNYGNSFNPQGIMARPRAPYSNGLQGNRQ
SFRTQERTQYQEQSFRSPERIQYQEQYHNLRNGISSLTMEESVRTRSPVVAQPGMPNPGY
STNPHPQFVQNAGALPVPPTKWFNKESSANGGFYGRQQEPGNGGPYEQQVKKVYQVKARD
PQDLSNSGSQQ
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccccgcgttttaccgctggctggcggatcggtacccgctctcgatcgtcgac
gtggtcgaggaacaccccagggaggaccccaacggcgtgccgagacctatcgacgtttcg
cggccaaaccctaacgggtttgagttcgataatctctacctcgatatgaacggcattatc
catccctgctttcatcccgatggccgacctgctccggttacttatgaggacgtatacaag
tcaatatttgactacattgatcatctcttcacgctggttcgcccaagaaagcttcttttt
atggcaattgatggggttgcgccaagagcaaaaatgaatcagcaacgcactcgacgtttc
agagctgcaaaagatgcggctgaggcggaagctgaagaagaaagactaaagaacgaattt
gagacggagggggaatcattggttcctaaagagaaacgtgaaacttcagattcaaatgtt
attactccaggcactcaatttatggcggttctctcagtagcacttcagtattttatacaa
agtaaattgaacagcgaccgtggttggcggtctacaaaggttattctttctgatgccaac
gttcctggtgagggggagcacaaaataatgtcatacatccgatcgcaacgcaaccttccg
ggttttgatccaaacactcggcattgtctttatggtctggatgcagatctaattatgctt
gcattggctacacatgaggttcacttctcaatattaagagaggtgattactcttccaagt
caacaggaaaaatgttttctttgtggacaagttggtcacctggcagctgaatgtcgtggt
ggcgatgatggtgccaatttaactccaattcaccagaagaaatatcagttcctccacatc
tgggtgttgcgtgagtatttgcaatatgagctggacatacccaatcctccttttcagctt
aattttgaaaggatagtggatgattttgtgtttatgtgcttttttgttggcaatgatttt
cttccacatatgccaacattggagatcagagagggtgcaattaatttattgatgcatatt
tatagaagagagttttctgctatgggtggctatctcactgatgcgggtgaggtattgcta
gatagagtagagcgttttatccagtctgttgctgtctatgagcgccaaatttttcaaaag
cgggctcgaattcagcaggcctttgagaataatgaagagagacagagaaatagaagagag
tcttgtgaagagctacccgctccggtggtagaaaaggtggtggacaaggttaaattgggg
gagcctggatatacagaaaggtattatgctgagaagttccaagtatcaaagccagaggag
gttgaaacagttaagaaagacctggttctgaaatatgtagaaggcttatgttgggtctgc
cgatattactaccaaggggtctgctcatggcaatggtattacccataccattatgctcct
tttgcttctgatttagaaaatctggatgacttggaaataacatttttcttgggagagcca
tttaaaccctttgatcagctcatgggaaccttaccagctgcaagttgtagtgctcttccc
gaaaaatacagaaatttaatgactgatccgtcatctcccatttgcaatttctatccatct
gattttgagattgacatgaatggcaagcgctttgcatggcagggtgttgccaaattgcca
ttcattgatgagaagaaattgcttgctcagacaaggaagctcgaaagcactttaacggaa
gaagagctagctcgaaatagtgtgatgcttgatttgctttttgtctatccttctcatcct
ttggcgtctcatataactttgtactaccaagtatattgtcagagcccaccacatgtaaga
ttaccatgggtgatagatacaagtctcagtggtggaatgaatggattcctttggttatcc
gagaggaatgggtttagaaatgtaatcccatcacccgtgcgtggttttcccaacatagac
cataaccaagtcctaaatgttacatatcttcttcctgtagctcagaaacacattccagaa
cctcccaggggtgtgatcatgcccagaaaggttgtaaaacctatggatatcaaacctccc
ccggcattatggcatgaagacaatggtccccggcgctaccaaaacagagataggccacaa
atacctggagcaattgctggacctatgttgggtgaagcagctcatcgacttgtcaagaac
acactaaatcttagacctagtaatgcatcctctggattttgggatcaaccgcggccttta
cgaactacttctggaaactacatcggtaattatccagtcaacagaccaagaccagccggg
ccatctgggtatgaaaggggtttccgtgaagaaccaaattatggaaattcctttaatcct
cagggcatcatggctaggcccagagctccgtactcaaatggtctgcagggtaacagacaa
agttttaggacacaagaaagaacgcaatatcaagagcagagttttagatcaccagaaaga
atacaatatcaagaacagtaccacaacttgagaaatgggatctctagtttaacaatggaa
gaaagtgtgagaaccaggtctcctgtagtggcacaaccagggatgccaaatccaggatac
tccacaaacccacatccgcagtttgtgcagaacgcaggcgctcttccagtgccacctaca
aagtggttcaacaaagaatcgagtgccaatggtggattctatggtaggcaacaggaacct
ggaaatggtggaccatatgaacagcaggtcaaaaaggtttatcaggtaaaggcacgtgat
cctcaggacttgtcaaactccggaagccagcagtga
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