Fragaria vesca (woodland strawberry): 101292560
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Entry
101292560 CDS
T02666
Name
(RefSeq) ABC transporter I family member 21-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101292560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101292560
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101292560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
AAA_23
NACHT
AAA
AAA_28
SMC_N
AAA_15
AAA_22
AAA_18
PduV-EutP
SRP54
Zeta_toxin
AAA_25
AAA_24
AAA_5
Arf
AAA_30
AAA_33
AAA_14
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
101292560
NCBI-ProteinID:
XP_004289962
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Position
LG2:6373498..6376480
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AA seq
284 aa
AA seq
DB search
MAEPQESEASSGIRVSGMQFAYDAQPPLFYDFSLNVAPGSRCLLVGANGSGKTTLLKILA
GKQMVGGRDVVRVLNCSAFHDTHLVCSGDLAYLGGSWSKTVGSAGEVPLQGDFSAEHMIF
GVEGTDPVRREKLIELLDIDLKWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDV
VARMDLLEFFKEECEQRGATIVYATHIFDGLETWATHLAYIQDGELKKAQKLLEVEELKN
SVNLLSVVESWLRAETKQEKKKTKNPAQTSSPFGMSSRQMAYYR
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaccacaagaatcagaggcctcgagcggcatcagagtcagtggcatgcaattc
gcatacgacgcacagccgccgctcttctacgacttcagcctcaacgtcgctcccggatcg
cggtgccttctcgtcggcgccaacggatccgggaagacgacgctgctgaaaattttggcg
gggaagcaaatggtgggagggagagatgtggtgcgggtgttgaattgctcggctttccat
gacactcatttagtttgtagcggcgacttggcctatttgggaggctcctggagcaaaacc
gtcggctctgctggagaggtaccgctgcaaggagacttttctgctgaacatatgatattt
ggagttgaaggaactgatccagttaggagagagaagttgattgagctgcttgatatagat
ctgaagtggcgaatgcataaagtatcggatgggcagcggcgccgagtgcaaatctgtatg
ggacttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgtt
gttgctaggatggacttattagaattcttcaaggaagaatgtgagcagagaggagctaca
attgtgtacgcaacacatatctttgatggcttggaaacatgggcaacccatttagcttac
atccaagatggtgagctaaagaaggctcagaaattattggaggttgaagagttgaagaat
tctgtcaatctgctttctgttgtcgagtcctggcttcgtgctgaaaccaagcaggagaaa
aagaaaaccaaaaatcctgcccaaacgtcatctccttttggtatgtcgtcaagacaaatg
gcgtattaccgctga
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